AMCG00010880 (znf593)


Basic Information

Item Value
gene id AMCG00010880
gene name znf593
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3141407 ~ 3143759 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010880
ATGGGCAAATCCAAGCAAATTGGGAATCACAAGAGCGATAAGAAAAAGAACATTGCAAAGCAGTGGAAGACCAAACGCCGGACGAAGGATCTGGACCAGATCCACAATGACATGAAGGCGGGGAACATGGAGAAACTGCTGCACCAGGAGGTGGATCACGACGTCACGGGGAGCGCCCAGAATTACTGCCTGCACTGCGCgcGTTACTTTGTTGACTTGAAGACCTTGAAAGACCACTTTAAGACCAAAATCCATAAAAGgagGCTGAAGCAGCTGAGGGAGGAGCCGTACACCcaagaggaggcagagagagcgGCGGGGATGGGTTCCTACATCCCACACAAAGCCGTGGAAGTTCAAACGCAGCCTGTGGTCGAGGACATGAACTGAGCACGGACAGCTTGGCCAACTCTCCGCAGATTACGTCTCGCCCCACAAGAATTAGACTCCCCGACTCTCACTCTGAGACGTGCCCCCTGTTTAACTGTGCAGGGGGTCCTGTTGATAGATTTTAAGACGCATTAGTACATGTAAAGATCTGAGTAAATGATGAGATCTGAGTGCAGTGTTTGTCCTGCAGTGTGGGGGTGCATGAACAGAGGTTCCCCAGCCCTGTTGTGCATTCAAGCTCTCGTGAAATTGCTGGATTGCATCTTTTGGACCGTTACGGGGTTGATTCCCAGACCAGCCCTCATGGACTCAGTACCTTTTAAACCTGCCATACGATTTGTATGTAGATGTGCGGgcagaatatattttctcttaaaatctaatttttggtatttatttcCACTCTGGGTTCTACCATTGAAATTGCATGTCTGGACCCCGACTCTGAAACCGGGGTCATGTATTAAAGAGGTTTAAGATCTTAAATGTCTTTGATTCTTGACAGAGATTGGAAGTGCCTGGCTCAGATGATAAGTGCCTGGGTGTTTGTAGATACTGTGCCCTTGTTAGGAGCTACacataaaaacatcctgtatcttgtacaatatattaaaagaaaagctgCTGGATGTGACCTATGGTCAAATTGAATGTATTAGGTGGTCTCTGATTTGCTGGATTTAAGCATAAGAAATTCTCAAATACAAATTGTGAGTTTTTGgtagcaataaaataaaaattggtcAGTTTATGTGCTGAGAA

Function

symbol description
znf593 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF593 (zinc finger protein 593).

NR:

description
PREDICTED: zinc finger protein 593

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14821 BUD20; bud site selection protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010880 True 1152 mRNA 0.46 3 3141407 3143759

Neighbor

gene id symbol gene type direction distance location
AMCG00010878 NA coding downstream 198 3128252 ~ 3141209 (-)
AMCG00010877 mtfr1l coding downstream 34203 3103974 ~ 3107204 (-)
AMCG00010872 si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069 coding downstream 97317 3034347 ~ 3044090 (-)
AMCG00010871 NA coding downstream 109845 3012593 ~ 3031562 (-)
AMCG00010873 LOC101163182,LOC101080136,LOC107569308,LOC107754925,LOC108229131,LOC107395731,LOC103130392 coding downstream 157335 2976456 ~ 2984072 (-)
AMCG00010879 dylt1,dynlt1 coding upstream 24666 3168425 ~ 3171989 (-)
AMCG00010883 LOC106588496,LOC103393992 coding upstream 47062 3190821 ~ 3209564 (-)
AMCG00010891 NA coding upstream 115184 3258943 ~ 3263464 (-)
AMCG00010896 NA coding upstream 273390 3417149 ~ 3418378 (-)
AMCG00010893 NA coding upstream 298682 3442441 ~ 3450634 (-)
G102834 NA non-coding downstream 150159 2990647 ~ 2991248 (-)
G102816 NA non-coding downstream 186432 2954760 ~ 2954975 (-)
G102785 NA non-coding downstream 308224 2789470 ~ 2833183 (-)
G102725 NA non-coding downstream 466271 2674563 ~ 2675136 (-)
G102651 NA non-coding downstream 703709 2386723 ~ 2437698 (-)
G102887 NA non-coding upstream 1505 3145264 ~ 3145687 (-)
G102888 NA non-coding upstream 16078 3159837 ~ 3160036 (-)
G102889 NA non-coding upstream 16824 3160583 ~ 3160897 (-)
G102890 NA non-coding upstream 17338 3161097 ~ 3161512 (-)
G102920 NA non-coding upstream 124783 3268542 ~ 3269769 (-)
G102762 NA other downstream 363384 2739816 ~ 2778023 (-)
G102774 NA other downstream 380143 2758478 ~ 2761264 (-)
AMCG00010843 NA other downstream 644961 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 2106533 1033830 ~ 1034874 (-)
G102434 NA other downstream 2163280 975553 ~ 978127 (-)
G102902 LOC104921322 other upstream 36211 3179970 ~ 3182619 (-)
G102990 NA other upstream 177054 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 177617 3321376 ~ 3327559 (-)
AMCG00010901 NA other upstream 410227 3553986 ~ 3574815 (-)
G103112 NA other upstream 1026034 4169793 ~ 4185974 (-)

Expression


Co-expression Network