AMCG00010881 (LOC106588497,LOC102218321,LOC107094257,LOC103154989)


Basic Information

Item Value
gene id AMCG00010881
gene name LOC106588497,LOC102218321,LOC107094257,LOC103154989
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3183119 ~ 3188870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010881
GCACAGCCCGCAGACAGGTCCACACAGCAGCGCCGCGTTCACCGCCATTAACCGCGCACAGCCCGCAGACAGGTCCACACAGCAGCGCCGCGTTCACCGCCATTAACCGCGCACAGCCCGCAGGCAGGTCCACACAGCAGCGCCGTCTGGCTTTGCGTCGGTGATGGCAGCCTTATCCACGGGCCCTCCCCGCTTACCAGGGCTGTCCCCCCAGCAGCCGTCCCAGGGGAACCCGGCCTCTGCCCAGTCCCAGCCTCAGGGCACCCTGCGCGAGATCTCGCCCGTGTTCCTGTGCAAGATCGGCCAGGAGACGGTGCAGGACATCGTGACGCGCACCATGGAGATCTTCCAGATCACAAGGGCCACGCAGCTGCCGAACGGCGTGACCCAGAGCCACGCTGTGTATCAGGACCGATTCGGCAAACTGCAGGAGCACCTCCGGCAGCTCGGCCTGCTCTTCCGCAAGCTCCGCCTCCTCTACGAGCGCTGTGTGGAGATGACCTCCGACCTCCGCGAGGCGCCCAGCGAGCTGATTCCCTACACCTCTGAGGAGCCCAGCAGTGTGCGAGCGGAGCACTGCGGCTTCCCCGTGAGCCCGGAGCAACAGGAGATCTGCGAGAAGGTCAAGCAGAAGAACCAGGAGATGAAGCAGCTGATGGACCAGATGAGGAACCTGCTGTGGGATGTCAACGCCATGCTGACCCTGAGGAAGTGACCTGGGGGCCACGCAGCCGGACTCCCGCCGCGGCCCTCGTCCATTTTGGAGCTGCGGTGGGGGGGGTTTGGAAGACATCCTCACATTTTGCTtcaactgtttacattatgagCAGAATTTGTTTTCTGGAACGTGTTAGTCGGGGGTTCTCCATCAGGGGTCCAGGAGACCCCCGGCCTGCCACGTTTAATAGGTCACATTTAGCCAGTCGGTTTCTAATGACCTGGGTGCATTCAACTCTCAATAAGCAGGGAATCATTGGGAACAAACCCCATTCCGGCCAGTTCGCCTAAATGAGCGAGTGACTTAATTGTGATTGCATTAGAAAGTGTAACTATGAAAACCTGGCCAGCTCATTAATACtggaaaagaaaactgcagggaCATTTACTCCAGCATTTGAAGCGATGTGTGGAGGTGTACACTGCTGAGTGCTGTATTTATTCAGAACCTGGGCAGCTAATCTCTGAACTCACACCTCTGAAGGACATAGACCTGCCTGCACCCAGTGGGGTTTGTGTCGGCCATTTTAGAGCTGCCTTTGTTGTCTTGATGCAGGCAAACTCTTTCACCTCCTTTCTTCTGTTCTGTGTTATGCAATTGTAATCATGTTGTGAGGAAGGGCATACACTGTTCAAAACTCTGGTATTGCTCACGTGTAGAGAGTTGTTTAAGATACACAAACGACTCTAACTCCAGCTGCTGCTCTGCTGTTGTGATTAGTTCTATATCAGGGAAAATGTATAGGCAAAGAACTGAAATGAACTTAAGCTAGGTTTGTTAATTCTTTCTTATTCTGTTTTGCCACATGTACATTTGTAACGAAATATGAAACCGACAATAAACTGAAGTACGATGCAAACATCCGCCAAGCGTCTTGACTTGCTGGCGGGAAAGGAGATTTGGCTGTAGAAAAAGCGGGGATATATTTCTTTGACTTGGGCCaacttctgtttgtttatttgtgttcctCTTTTATGTTACACAGTGAAGTGACGTGTTGTGGATTTGTCTTGTTATATTATGGAAAGTGTTAAGCTGTCTTTTCTCTACATGAATAAAGGTAGATCTGTCTTA

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 30-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010881 True 1792 mRNA 0.53 5 3183119 3188870

Neighbor

gene id symbol gene type direction distance location
AMCG00010882 LOC104921322 coding upstream 463 3179960 ~ 3182656 (+)
AMCG00010874 zmpste24,face1,LOC107670834,LOC107654896,LOC102792402 coding upstream 4088 3172822 ~ 3179031 (+)
AMCG00010875 NA coding upstream 15496 3145114 ~ 3167623 (+)
AMCG00010876 NA coding upstream 54870 3112434 ~ 3128249 (+)
AMCG00010870 NA coding upstream 174828 3004761 ~ 3008291 (+)
AMCG00010885 NA coding downstream 88957 3277827 ~ 3283330 (+)
AMCG00010889 NA coding downstream 160886 3349756 ~ 3386357 (+)
AMCG00010890 NA coding downstream 199385 3388255 ~ 3397892 (+)
AMCG00010887 NA coding downstream 248451 3437321 ~ 3439509 (+)
AMCG00010897 NA coding downstream 360595 3549465 ~ 3550451 (+)
G102859 NA non-coding upstream 52855 3093934 ~ 3130264 (+)
G102860 NA non-coding upstream 79477 3099921 ~ 3103642 (+)
G102843 NA non-coding upstream 155722 3027068 ~ 3027397 (+)
G102693 NA non-coding upstream 522261 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 733238 2449200 ~ 2449881 (+)
G102944 NA non-coding downstream 243945 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 246049 3434919 ~ 3457657 (+)
G102959 NA non-coding downstream 270992 3459862 ~ 3462503 (+)
G103035 NA non-coding downstream 403798 3592668 ~ 3593407 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 1099153 4288023 ~ 4290680 (+)
AMCG00010856 NA other upstream 405086 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 420893 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 1109877 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 1118775 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 1219154 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 113086 3301956 ~ 3310953 (+)
G102921 NA other downstream 142714 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 142849 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 232212 3421082 ~ 3428429 (+)
G102947 NA other downstream 247748 3436618 ~ 3443534 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014342 zgc:114119 coding NC_007130.7 CM002903.2 47476908 ~ 47481618 (+)