AMCG00010883 (LOC106588496,LOC103393992)


Basic Information

Item Value
gene id AMCG00010883
gene name LOC106588496,LOC103393992
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3190821 ~ 3209564 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010883
ATGAACTCTACACAGACTCTCTTTGACTACCAGGAGCTGCTACACAACTCCACTTTCTGCCTGGTGCCCCGCGGACGCCGGCTGGGCTCCTTCCGCTTCCTCGAGTCTCTGCAGGCTGCCTGCATCCCCGTGCTGCTCAGCAATGGCTGGGAGCTGCCGTTCTCCGATGTGATCTACTGGAGCCAGGCTGTGATCGAGGGGGACGAGAGACTCCTGCTGCAGGTGCCCTCGACCGTCCGCTCCATCGGCAATGACAAGATCCTGGCGTTTCGGCAGCGCACGCAGCTACTGTGGGAGGCTTACTTCTCCTCTGTGGACAAGATCGTGCTGACCACACTAGAGaTCATCAAGGACCGCGTGTTCTCACACGTCTCGCGCAACAAGCTGATGTGGAACGCGCTGCCGGGAGGATTACTGGTGCTGCCGGAGTACTCCACCCACCTCGGCCACTTCCCTTTCTACTACCTGAGCCAGGGTATCAGCCCTGGTCAGGAATTCACTGCTGTAATCCACGCCGTCTCACCGTTGGTCTCTCAATCGCAGCCAATAATGAAGCTCCTGCAAGTGATCTCCAAGTCGAAGTACTGTTCACAGACCAGTAGCCGTTTCTTACCCCACAGTGCCATTGAGACAGAGGCTATACTGAGTCTGGATGAAGACACCGTGCTGTTAACGAGTGAGGTGAACTTTGCCTTCATGGTGTGGCGTAGTTTCCCCGACCGGATCGTGGGCTACCCCCCCCGCAGCCATTTCTGGGACAACAGCAAGCAGGTGTGGGGGTACACCTCCAAATGGACCAATGAGTACTCGATCGTGCTGACGGGGGCTGCCTTCTACCACAGGTACTATCACCACCTTTTCACACACTACCTCCCCAATACGCTGCGCGCCCTCGTCGACCAAACGGCCAACTGCGAGGACATCCTTATGAACTTCCTGGTGTCGGCCGTCACCAGACTGCCGCCAATCAAGGTCACACAGAGGAAGCAGTACAAGGAGGTGCAGACGCCACAGGCCATGAAGAGCACGCACTGGGCCAACCCCGATCACTTCTCCCAGCGGCAGGACTGCATCAACGCCTTCGCCCGCTGGTTCGGCTCCATGCCCCTGACGCACTCGCAGTTCCGCCTGGACCCCGTGCTCTTTAAGGACCAGGTCTCTGTCCTGCGCAAGAAGTACAAAGACCTGGAGCGCCCCTGA

Function

NR:

description
PREDICTED: exostosin-1c-like isoform X2

GO: NA

KEGG:

id description
K02366 EXT1; glucuronyl/N-acetylglucosaminyl transferase EXT1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010883 True 1200 mRNA 0.58 10 3190821 3209564

Neighbor

gene id symbol gene type direction distance location
AMCG00010879 dylt1,dynlt1 coding downstream 18832 3168425 ~ 3171989 (-)
AMCG00010880 znf593 coding downstream 47062 3141407 ~ 3143759 (-)
AMCG00010878 NA coding downstream 49612 3128252 ~ 3141209 (-)
AMCG00010877 mtfr1l coding downstream 83617 3103974 ~ 3107204 (-)
AMCG00010872 si:ch211-195b13.1,LOC108273319,LOC108411161,LOC103036792,LOC107102671,LOC108251730,LOC103473069 coding downstream 146731 3034347 ~ 3044090 (-)
AMCG00010891 NA coding upstream 49379 3258943 ~ 3263464 (-)
AMCG00010896 NA coding upstream 207585 3417149 ~ 3418378 (-)
AMCG00010893 NA coding upstream 232877 3442441 ~ 3450634 (-)
AMCG00010894 NA coding upstream 244359 3453923 ~ 3463743 (-)
AMCG00010892 NA coding upstream 265068 3474632 ~ 3483623 (-)
G102890 NA non-coding downstream 29309 3161097 ~ 3161512 (-)
G102889 NA non-coding downstream 29924 3160583 ~ 3160897 (-)
G102888 NA non-coding downstream 30785 3159837 ~ 3160036 (-)
G102887 NA non-coding downstream 45134 3145264 ~ 3145687 (-)
G102834 NA non-coding downstream 199573 2990647 ~ 2991248 (-)
G102920 NA non-coding upstream 58978 3268542 ~ 3269769 (-)
G103006 NA non-coding upstream 211324 3420888 ~ 3424769 (-)
G103050 LOC103376870 non-coding upstream 574693 3784257 ~ 3784631 (-)
G103087 NA non-coding upstream 929056 4138620 ~ 4139637 (-)
G103094 NA non-coding upstream 940935 4150499 ~ 4150917 (-)
G102902 LOC104921322 other downstream 8202 3179970 ~ 3182619 (-)
G102762 NA other downstream 412798 2739816 ~ 2778023 (-)
G102774 NA other downstream 429557 2758478 ~ 2761264 (-)
AMCG00010843 NA other downstream 694375 2481874 ~ 2496446 (-)
AMCG00010806 NA other downstream 2155947 1033830 ~ 1034874 (-)
G102990 NA other upstream 111249 3320813 ~ 3419176 (-)
AMCG00010895 NA other upstream 111812 3321376 ~ 3327559 (-)
AMCG00010901 NA other upstream 344422 3553986 ~ 3574815 (-)
G103112 NA other upstream 960229 4169793 ~ 4185974 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other upstream 1433088 4642652 ~ 4650406 (-)

Expression


Co-expression Network