AMCG00010900


Basic Information

Item Value
gene id AMCG00010900
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3485541 ~ 3495838 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010900
GTCTAAGCCAGGCACCAGGACTCCTGCTGCTGGAGAACCACAGCTCTTACTGACTTGTGTCTCTCAAATAATCAGATGACTTCTGTGTCCAATTCCTTAGCCATCGAGCAGTGTAAGTTCTCCATAATTCTGTTGGGATTGCAGCTGCCGAAGCTAAAGCAATCGCATGCGCTGACTACCAACACACACCGAAGAGCGAGCAGGACCGACGCGACAGCAGAAACGAGTGCACTGCGGGGTGGCCCCTTtaagagacggggagagagggGTCTAGGAGGGGGCTGTGTCTCGGTGCAGCATGTGATAAGAACAGATAGGGGGCTGCTTTTTGTAGGCTGACCGATGGGGTCCTGGAATGCACAGGATCTGGGCTGAGGATCGTGTGACGGCGCTCGGGGGTATAAATAGCATGACGAATAGTGACGGGCAGAGACCAGCATTTCACCCACACTGACCACAGATGTCGTGACACCGAAGGACAGAGAGGAATTATAACAAAaaagggagtgtgtgtgtgtgtatatatatatagagagacagATTTGTTTGTCTGTAAACCATTAAAAGTCCACTTCAAAGGTATGGATTTCCAGTCGAGTATCATCCAGGAGTCTAACAGGATGGAGAACCTGGAAAAGCAGTTGATCTGCCCCATCTGTCTGGAGATCTTCTCCAAGCCTGTGGTTATCTTGCCCTGCCAGCACAACCTGTGTCGGAAATGTGCCAATGACGTGTTTCAGGCTGCTAACCCCTACTGGACGTCCCGTGGCACCAACATTTCAGGAGGCCGGTTCCGGTGCCCGTCATGCCGCCATGAGGTGGTGCTGGACCGCCACGGCGTGTACGGGCTGCAGAGGAACCTGCTAGTGGAGAACATCATCGACATCTACAAACAGGAGAGCACCAGCCCCAGGCCCCTGAAGAAGGTGGACCAGCCCAGGTGTGTGGAGCACGAGGACGAGAAGATCAACATTTACTGTCTGACCTGCCAGGTGCCCACCTGCTCCATGTGCAAAGTGTTCGGCGCTCACAAGACCTGTGAGGTGTCGCCCCTGGAGAACGTCTACCAGCGCCAGAAGACGGAGCTCGGTGATGGGATTGCTACACTGGTGGCCGGCAATGACAGAATCCAGGCTATCATGACTCAGTTGGAGGACACGTGCCGAACCATTGAGGAGAACAGCCAGCGGCAGAAGCAGAACCTGAGCGAACGCTTCGACCTGCTCtatgccatcctggaggagaagaagggcGAGATGCTGGAGAAGATCACGCAGGAGCAGGAGGACAAGATGGGCTACGTGCGCTCCCTGGTGCAGCAGTACAAGGAGCAGCTGGAGGGCAGCTCCAAGCTGGTGGAGACGGCCATCCACTCGATGGACGAGCCCACCGTCGCCACCTTCCTCCTGGTACGGGCGCAGGGACGAGCGCATTGGATGGCAGACAGTTCCAGACTCACTCAGATGGAGAGGACGGAGCCCGGCTTTGAGAACATGGATCATTTTGTGCTCAGCACTGAACACGTGGAGGCCATGCTTAGGTCTATGGAATTTGGAACAGAAGATGATGAGGACTATGACGAAGAGgagcaggaagaggaagaaggagaggagACCGCAGAGGAACCACCGGAAGgTCAGCAGTGATTTTGTCGGGGGGATTTCCAGGATTAACAACGACGAAGGTGTTTCCAAGAAACGCCTGAACGTGCACGATGACTTTGGAAGAGGACAATGATTGGACGAGGAGGACTCTCGCCGGTTGACATCAGAAGGTGTGACCGTGAGGGACAGGAGcaaggtggtggggggggtaggGGAATGACTCTGACCTTAGGAGACTTTCTGAAATGTTTCACAAGGAGCCGGGTAACTCGAGCTGTGCCAGACCAAAGTTTCCAGGTATCTTTTTTGTGTCTTCCGTAGCTCTTTCTTCGCCTTTTTCCGGTTTGTTTCTCGGCCGCAGCCTCTTGCCCGGTGACTGTCTGTGCTTGTGAAATAACAAGAGCACACATTGATTTGATACTTTTTACAGAGAACTTACAATCTACTCATTTGATCCTTCAAACTCTGAACAGTGAAGAGCAACCAGGGAGAGACCTGGGTGTCCTGTCTCTTGCTGTGCATTTCACCACAGGATACCCACAAGCCCCTGCAGCAGCCTGACGGAGGAGTGGAGCTGGACCAAGTTTGATCTGCCTTCAGGTTAAATTTGGGAAAGTTGTACTGTTTTCGGACCACAGAAAGCATTGTGGTATTCAAGGGACTGTGTGTAGTGGAGTCGACAATGAAAAAAATGCCTAACCATTCTTAAAGCACATGAACAAGTTTAATGACATTTGTATCCATGGATTTTAAAGGCAAACACTACAATAGTGTGTTCTTTTCcgggaaacaaaaaacacaacaacgacaatgacaatgacaacaACTTGGTTATGGAATCATTTCCAGTTGAAAATCTGAATGACATGAAGATGAACTGACCATCGAAAGTCCCAGTTTGTAAGCTTCGATGGCAGGGGAGACACAACACTGGGGACGGTTGTAGAGAGGAGAACAATGCTTCTGTCAGCTGGTGTATTAAGTATGCCAGCAGAGCGAGGCATTggtgaaatgtatttgagaatGTCAGTAGTGAGATCTTTGATGTTCAAACTTTTTTATAGACTACAAAGTTGTGGTCAAATGTCCAATTTCAAGTGGGTTATTTCACTCGGTCTCAGGTATAGATGGCTACAAAGCAGAGTGAGCCTGTGAGTCTCCAGAGCAGTCTACCTTAGTGTAGAATCGAATGGATATCACAACAATCCTCTGAACTGTCCTCTGTGACTCGAACGCAGCTCAGAAATGATCCCTTAAAGATAATTCTCTTTAGAAAAGGTAACAAAAAACAGGAGCTTCCTGGTCGACAGCACCACCTGTGGCTGGTGTTGTGAAACTCTTGTGCGGACGCAGTAAAATCGGGATGTCTTTGTTTACCCCCCATCATGAATTCACTCCTGAAACTGACTCTTTTTGTACGGGTACAAAAGCaatcattttgtacattttatatatgacTTTTTTTGTACATGATGTCATAGAGAACTTTTTTGGGAGGGGGTGCAAACTGGAGAAagaaatgttatgttatgaGCATGACTGAACATTCACTGACACGCACTGccatgtatgttttgtgtttgaaaaccACAGAGAGGAAATTGCAACGCTTGAAGGATGGGGGAGAAGTGCTGATTGAATTCAGTTGGCTGTAGGGGTGAGGCACCGTAGTGATAGTTTGTTGATACGTTTGTGAGACGCTTGCCACGCATACGAGACACGTTCAGGGATATTGTGCAGAATACACTGCTAAACTGAATTTTgtgatcaatgcacaatgaTATTAAAGTGttgatttcatgttttcaaata

Function

GO: NA

KEGG:

id description
K10655 TRIM63, MURF1; tripartite motif-containing protein 63

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010900 True 3416 mRNA 0.49 8 3485541 3495838

Neighbor

gene id symbol gene type direction distance location
AMCG00010892 NA coding downstream 1918 3474632 ~ 3483623 (-)
AMCG00010894 NA coding downstream 21798 3453923 ~ 3463743 (-)
AMCG00010893 NA coding downstream 34907 3442441 ~ 3450634 (-)
AMCG00010896 NA coding downstream 67163 3417149 ~ 3418378 (-)
AMCG00010891 NA coding downstream 222077 3258943 ~ 3263464 (-)
AMCG00010898 fam76b coding upstream 3164 3499002 ~ 3507995 (-)
AMCG00010899 NA coding upstream 18804 3514642 ~ 3524577 (-)
AMCG00010902 NA coding upstream 81393 3577231 ~ 3588095 (-)
AMCG00010904 NA coding upstream 96818 3592656 ~ 3611545 (-)
AMCG00010909 NA coding upstream 519760 4015598 ~ 4020921 (-)
G103006 NA non-coding downstream 60772 3420888 ~ 3424769 (-)
G102920 NA non-coding downstream 215772 3268542 ~ 3269769 (-)
G102890 NA non-coding downstream 324029 3161097 ~ 3161512 (-)
G102889 NA non-coding downstream 324644 3160583 ~ 3160897 (-)
G102888 NA non-coding downstream 325505 3159837 ~ 3160036 (-)
G103050 LOC103376870 non-coding upstream 288419 3784257 ~ 3784631 (-)
G103087 NA non-coding upstream 642782 4138620 ~ 4139637 (-)
G103094 NA non-coding upstream 654661 4150499 ~ 4150917 (-)
G103095 NA non-coding upstream 656680 4152518 ~ 4152748 (-)
G103149 NA non-coding upstream 929516 4425354 ~ 4425572 (-)
G102990 NA other downstream 66365 3320813 ~ 3419176 (-)
AMCG00010895 NA other downstream 157982 3321376 ~ 3327559 (-)
G102902 LOC104921322 other downstream 302922 3179970 ~ 3182619 (-)
G102762 NA other downstream 707518 2739816 ~ 2778023 (-)
G102774 NA other downstream 724277 2758478 ~ 2761264 (-)
AMCG00010901 NA other upstream 58148 3553986 ~ 3574815 (-)
G103112 NA other upstream 673955 4169793 ~ 4185974 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other upstream 1146814 4642652 ~ 4650406 (-)
AMCG00010937 NA other upstream 1619877 5115715 ~ 5129141 (-)
AMCG00010939 NA other upstream 1638215 5134053 ~ 5140509 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G110052 NA non-coding NC_053121.1 CM020918.1 37036107 ~ 37210937 (-)
mexican tetra (Astyanax mexicanus) G109527 NA unknown NC_035909.1 CM008312.1 7267871 ~ 7269592 (+)