AMCG00010903


Basic Information

Item Value
gene id AMCG00010903
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3670455 ~ 3677090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010903
ATGCAGCTCTTGTCTGAGTCTGTTCAGGTGCAGGTTTTCATCAGTATCTCCGAGCTCTCATGCAAAGACCAGGAAGTGTTCTGGCAGGGCTCGGTGCGATACCACACCCACCAGAAGGATGGCATTCTGGTGTGTGCCGATTTCTTCTCCGGACACTGCCATCTGGGGGTGCTGTGCCCCCGACACCACACGCGCCGCCCCTATCACTGGCAGATCAGACACTCCAAGTCCAAGCAGTGGATGAGCATCTCTGACTCGGCCCAGGAGCAGCTAGAGGCCCTGTACTGCAACCCTGACCACGACCAGGTCAAGGTGAAGGAAAGATCTGATGCCACAGACACGTATCAAGTGGATTTCCAGAGTATGACGACGACAAAGGGCTGGACCTACGACCGAGTGCGCAGACTGGCCACCACGACCGACCCAGACTTGGGTTTCAGTTTCCACACCGAGTGGTTTATCTTTTGGAAGGAGGGGACGTCCTGGCAGAAATACGACGAGCCAATAGCCAGCCAGTTAGAGGGTGCATTTGAGAAGGGCATGTGGAACgaagctttcattttaaatggaaatatctaCAATGTTTACTTGAAAAATTTCACACAGTGCAATGTAGCAACGGGCTACAGTAGAAGTATCCGCCGAAGACCGTGCTTCCTATCGGACCTGCGCCTCACGGAGAATTTGCAGAGAGTAAATCACGTAGAGCAGGGGACGTCCTCAGCTTTTTCAGAGAATCCGTTGTCCCGTATCTTCAGCAACTATCCCCTGACTTGGGTTCCTGACCTGCCAAACACGGAGTGTTTTGCCAAGATCCCGGTGCCGGCGACCAGCGAGGCTTACCTGCATGTTCACAGGCTTCTGCACCAGACTTTACCTGAAACTGACGTCTATATCATTGCCATCGACCAGATACAGAACGAATGGCTCTGGAGTAAATACAAGGCacaGAGAGAGTTCATGTCATGGCGGTCGGGCGCCGAGGGAGACTCTGCTGTCAATGAGATGCATCTCTTCCACGGCACGACGGCGAATGTGGTGGAAGAGATCTGCAAAATGAACTTTGACCCTCGTCTCTGGGGCACCAAGCATGGCCACGTGTATGGCCAAGGTACGTACTTCGCGAAGGACGCCAGCTGCTCCGCTAGATACATTCCCCAGGGGGCTGGGGAAGAGCACATGTTCCTCAGCAAAGTCCTTGTGGGCAAATCAACGCTAGGGAATAGAGCGCTACGCCGGCCTCCGCCTCTTCCCTCCGGAGATCTGTACGACTCCTGCGTGGACAACGAAGCGCAGCCCAAGATATTTGTCATTTTCGACAACAGCCAGTGCTACCCCTACTTCCTCATTCGCTACAAGCGAAGGACGGGCAGCATCAGCGTGTTTTAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010903 True 1389 mRNA 0.54 6 3670455 3677090

Neighbor

gene id symbol gene type direction distance location
AMCG00010897 NA coding upstream 120004 3549465 ~ 3550451 (+)
AMCG00010887 NA coding upstream 230946 3437321 ~ 3439509 (+)
AMCG00010890 NA coding upstream 272563 3388255 ~ 3397892 (+)
AMCG00010889 NA coding upstream 284098 3349756 ~ 3386357 (+)
AMCG00010885 NA coding upstream 387125 3277827 ~ 3283330 (+)
AMCG00010905 LOC107688368,LOC107602377,LOC107654743 coding downstream 154224 3831314 ~ 3835049 (+)
AMCG00010907 NA coding downstream 212873 3889963 ~ 3893566 (+)
AMCG00010906 LOC107592052,LOC104955441 coding downstream 239199 3916289 ~ 3946921 (+)
AMCG00010908 NA coding downstream 343971 4021061 ~ 4024002 (+)
AMCG00010913 gnl2,LOC107700739,LOC104945619 coding downstream 461577 4138667 ~ 4150872 (+)
G103035 NA non-coding upstream 77048 3592668 ~ 3593407 (+)
G102959 NA non-coding upstream 207952 3459862 ~ 3462503 (+)
G102945 NA non-coding upstream 212798 3434919 ~ 3457657 (+)
G102944 NA non-coding upstream 237308 3432815 ~ 3433147 (+)
G102859 NA non-coding upstream 540191 3093934 ~ 3130264 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 610933 4288023 ~ 4290680 (+)
G103150 NA non-coding downstream 760787 4437877 ~ 4438136 (+)
G103152 NA non-coding downstream 859247 4536337 ~ 4619656 (+)
G103258 NA non-coding downstream 1457137 5134227 ~ 5140721 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding downstream 1676679 5353769 ~ 5355664 (+)
G103030 NA other upstream 90178 3577235 ~ 3580277 (+)
G102947 NA other upstream 226921 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 242026 3421082 ~ 3428429 (+)
G102921 NA other upstream 271949 3331584 ~ 3398506 (+)
AMCG00010886 NA other upstream 332039 3331719 ~ 3338416 (+)
G103078 NA other downstream 372848 4049938 ~ 4083586 (+)
AMCG00010922 NA other downstream 957382 4634472 ~ 4642403 (+)
AMCG00010979 NA other downstream 2709946 6387036 ~ 6395484 (+)
G103542 NA other downstream 2964893 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 3215307 6892397 ~ 6920931 (+)

Expression


Co-expression Network