AMCG00010904


Basic Information

Item Value
gene id AMCG00010904
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3592656 ~ 3611545 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010904
CGGCCGGCTGGGCTCGTGTTACAGCAGTGTCTGTCGGTAGAGGAGTCCACCTCGGGGAGGAGATGGGGGGCTGCAGTAATTGGTTCACATCTACAGAGAAGGGGTCAGTCCGGCTCTTTTAATGAGGAACATGTGAGCGCGGGGGGGAGGCAGCGGGGTGTGGAGCGAGTTAGGGGGGGTTGCTACAGTTGGTCTCCAGTGTGGTTCGCTTGCGTGACCTGGAACAGAATCAACTTTCAGAAAAACTtccagacaggcaggcaggcagacagaccgGCAGGCAGCCACGGGGAACGGCCCTCGAAATCCACCCAGAGTCGCTGCGAACCGAAAAGAAATCGGCGCCAGCGTCTCGGTGTCGACCCAAGTAGACTACAGACCGCATCTTTCACTCGCATTCGAACCAAGCGCTACTCGACAGGCTTGACAACAAAGCTGAGGGGCCACAGGAATCACACACTGGAGCTCAGAATGCGGATTGATGTTGAGTTTGAAGAGCTCGGCCGCTGCGATCGCCGTTCTTGTTCCAACTCTGATCTCATCCCTCGTAGTGAGGGGACCGATGATTGCCCTCGTGAGAACGCGGTGTCACAACATCTGTCCCGGAatGCCAGCTGCCGGCCACTCCAGGGCAGTGTTGTGGAGAACGGGGGCTGTGAGCCGGAGGCGCCCCCCGCGCTGTGCCAGGGCCCCCGTGCCTTCCTGCAGGGCAGCAGCGTGAGAGCCCACGAAGCGCTTAGCATCAGGGCCCCCCAGCGCAGAGAGCCAGGCGCCAACAGCAAGCACCCCCGCGCCAGGGAAGTCAAGTGCAATGGCAGTGAAAGCACAGGAGAAGATTCCTGTGTCAGCCTTCTAGACTCGCCAGTGATTAAGAGGGAGCACAAGCAGCCGACCCGACCCTGCTCTCCCCTCCCCAGCCTGGCCCCGAGCGCCGAGGGGGGCCGCAACTCCATTGAGCCGCCAAAGACTCCCGAGCTCGCCTGCCAGGGGAACGGCGACAGCCAGCTCAACGTGCTGCCCCAGGACGGGCCCGACGGGGAGCCTACGGGGGACCGCCTGGTTTCTCTGACCTGCACTCCACAGGGGGCCACTCCCGGCAACCCTGACACCCCTCAGAGGACAGGGGCCACCTGCTCCCTGGCTTGcttggaggagaaggagcaAGAGGCGACACAGGCCTTCAAACGCTTCCCCAGTGCCACCTTGCTCTCGCCCGGCAGGGGCAACAATATCGACGGTATCCTAACTTTGCTCCGCGCCAAGTGCGGCAACGGCAGGATCAACCTGTGCCCCGTGGTGCAGCTGAGTGACATCACTAAGGACATGAGCCGGCTCTCTGGGCGCCTGCGGTCCAGTGGGGTGCGGGTGGGCTGCGGTGCCTTGAGCGAGGACGACTGCATGGAGCTGGAGGGCCAGGGAGGCTGGGGGGAGAGCCCCGGGGCCGTGACCGGAGCCTCCCTCCACTACAGCTTCTTCTCCGCGCCCTCCTTGGCCAACGGACTATGCAGCCCAGGGGAGCGAATCCACAAGAGGCCCAAGATTGGACCAAGGCGGCGCAGACAGCCCGAGTCTAGGCCCATGGAGCAAACAGAACCCCAGCAGCAGCATTCAGAGCCAGGGTTAAAAATGGATCTTAACGAGGATGCACCAGCAGATCCCCTCGCAGACATACCGGACCAGCCCATTCCAGCCTGCCCTTTCAGCGAGACTGCAGCCCCTCTGGAGCCCCCGCCGTGTGAAGCCGACCCGGCTACCAACCAGCAGATCATCCCAGAATGCCTTCCCATCACGGccacaaacacagcagctcCCATCCCCACTGCCCAGGGAAACGCCGCGGCCGAGAAACAGAGTGCAGACTTCCGGCAGCAGCCCCCCATTCGTAGGGAGAGTCCGCTGGCTGGGACCCCTCCTGAGAGCGAGAGGAAGTACGCCCTGAGGAGCTCGGGGCGGCCCAGGTTTCCTTGCCATCTTAGAAAGTCATCCCGGCTGCGACGGGTGCTGGAAGATGACCCAAAGGAAGAAAAGCAAAGTTTCGACAAAGAGGACGCATCACTGGATGACTCCAGAGAGAAAGCAGTGGTGGAGAAAGCCTGGAAGAGCGAACGAATGATGGAGTCATTAGAGGAGAGGTGTGGTGAACAGGATGATCTTCAAGGCTTCAGTGAGACATCCCCTGGGTCTTACTCCACCTATAGGAAGGAGACTGAAATGGCTGCAACCCCGACCCGCGGCAAGCGGAAAGGGAAGTGTGTCGGCATCCGTAAGTTTGTGGTGAAAGTGGCTCGCATACCTGTCCACATGAGTCGACGTCACAAGAGCTACAAGATCTCCTCCATGGAGAGTCCAGCTGTGCAGGATGGGACCGGGGGGGGAGAGGAAGGCGAGGGAGTAAAGGGGCCACTGCGAGAGCCCACCGCTCTGCTGAAGATGAAGAACAATGGCAAGAATGTGATGGTGATGTTTCCACCCGGGGAGCTTCCAGTCATCCTAAAGAGGAGGCGAGGGCGGCCCCCCAAGCAGATCCCGCCTGGCCAGCCAGACCCTCGAGAGGTCAAGGCTGGAGAGGCAAAGAAACCTCGCCGCCGCCGGAGAGTGAAGCTGCCTTCCCCACAGCCATCCTATGTGGGGGACACCAATGATGCCAAAAGTGAATACGGAGATGTTCTTTCCAAGCTTGCCTTCCTCAACCGCCAGCCCCCAACCACTGGCCGATGTTCCCCCCCTCGCTGCTGGACCCCCAGTGACCCAGAGACCCTCCAGCAGCCACCCGAGAACCCCAGTATCTCCACCCTGCTGCACAGGCTCCAAGGCTTCAGGAGAAGGGGCGGCCGGGCTGGCTGCATGGGTGGGAGAGGTGGCCTCGCCGGCTCTGCTGAATCCTTCAAAAGGTCGTTCAGTGACTTCTTTGAGACCATtgggaagaaaaggaaagccCCACCGACAGACCCCAATCATCCCCGCAAACGGGGAAAGCAGGCCGCAGCTGACATGTCCAATGCCCCGCCTGGAGAGAAGGTGGTTCGTAAGAGGCGCCCTCGTAAGAATGGCGTCTTAAAGGCAGGGCAGGCACAGCAAGATCAAGACTGGTCTTGCGAGAAAAGCTGGACCGGAAAAGCGGATGGAAGGGTCAGCCAATCCGAACGGGGCCTGGGCTACCAAGGGTCTAACTCTCCCCGAGGGTTTGGAGCCTGTGATCCTGGGAAGAGTGTCTTCTACTCCGCCCAAAACCAGAGTAACCAGGAGTCACAGGGACTCTTTGCTGGCTATTTCCGCTCCCTTCTGGATTCAGACGATTCTTCTGATCTCCTGGATTTCTCCCTTTCCAACCAAGCAGGCAGCCGCGGTGAGTCCCGAAAGACTGCAGGCTGCTACGAATCCGGAAGCCCTGCACCCAACCAGCGTTGGTCCCCTGCCTTCCCTAAAAGGTGCCCCAAAGCCAGCCCATCAAGCAACGAGGGGGCATCTCAGTCTGCCAATCCCCCCAGACCTACTTACCCACAAGGCAGCGGCTATAGCCTCTCGCAGACATCTCCCACTTCCTTTCAGAAAGCTGTcccccctctctcgctctcccggTCCCCCAGCTCCCCTCACCCATCTGGCAGTTACCCACAGTATTCCGCCTACGGAAGTGGCTCCCAGGCCGGCAATAGTGCCGCCAGCACTGCCCTCCAGCCACACAAGCAGTACGAAGGGCAGAGGCTGAGCGACTGCAGCTTCTCCTATGGAGGAGGCAGCAGTAAGACGGCATCGGCGTCCCCCAGCAGCCACTGCAGCATGGGTTACGCCAGCCTCCAGACATCAAACACGCTAGGAAAGCGGGGATATGGATTCCCGAGCTCAGTGCACTCTGCTGTCGCCTCTCTGCGAGGAGACGGTCACATGGGAGCAGCTTCTCCGGGGGTTTTCATGACGACAAAGAACAGCCCCTTCCCTTCTTCTCAAGAGAGCTGCCGGCAGTACTCCGCAGCCCCCCACTGGAACTATAGACCCAATTACCAAGGTGGTGGCTGGAACACAGACATGTACGGTCAGCAGTATCCCGGCTCCTTCGACTATAACACTACCGGCGAACCCAAGGATATCTTAGACATCTCCAACTACACGCCCCAGAAGGTCAAGCAGCATTCCTTCTCCGAGACATTCTCCGAATCCTCCTCGGACAGCTCCCATTTGGGCCAGTCTGGTGCGCCGGGGGGATACAAGCAGCAGGAACCCCTGCCCTCCGGGGAGAACCAGTCCAGTCTCTCCAGTCTGGAGAAGCTGATGATGGACTGGAACGAGAGCTCCACGGGCCCCTCTTACAACTGGAACCAGAGCGTCCTCTTTCAAGGGGGCTCCAAGCCTGGTCGCGGGAGGAGGAAAAAGGCTGAACCCCAGGGAGAGGGTCATCACCTCGGGTTCCCTCCGGTCTCCTCTCCCTCCAGTTCCTCCTCACCCGTCCCCGGCCCTAAGCGGAGCGCCATGGGGGCCCGTCAGCCAAGGGGGTCTCGCGGCGGCTTCACCTCTTGCAGGCGGGAGCGTACCACGCTGGGGAAGCCCAAAGCCCAAAAGCCGAATGCCCAGCCTGCGTCTATGGCCCTTTTCCAGGACAGTCCAGACATGGCGGTGGACTATTACAGTGGTGACAGCAGCAGCATGTCCCCTCTTCCTGCCCAGAACCAAAGCTTTGGGCTGGGAGAGCGAGAGCAGTGTGAATACTCCAGCCCCTACTCAGTCAATCCGTCCACCCCGTCCTCAGAGGACAAATTCTCCCAGATGTTTCACAGCgaggcggcctccctctcccccGTGGTGGGTTTGCAGCCCGAGTCCACCAAGCCCTTCCAGTCACCTCCTTCCAAGCCCCCGCACACTTTTGCCGGCCCACCTAAGACCTTTTCCCCCAGCTGTTCCCCGACCCTGGCGTACAAGGAGAGCCCGATGCCCTGCGACACCAGGAGACTCCTCTCCTCCTGCGCTGCCCAGAGCCCCCACCGAGCCAGCAAGGACCTCTCCCAGTACGACTCCCCCAGCTACAGCGGCTCGCCGTACTGGTACCCCCAGGGCAGCTCCTTGGCGGGCAGCCCGCACCACTATGACAAGCGGGACGATTTCGCGGAGCGGGCAGGGGTCAGCCCCCAGCTCCTCGGCTCCATCTCCCTGGGCCGGACTGAGAAGGAGTCCCAGGAGATGGGCCGGGGGCTGTCCCTGAGGGCGGCTGCCCCCCCGTCTCCGTACCCTCCCATCCTGGCATCCTCGTGTGCCGCGACTCTGGACGCTTCCCCCCTTCCCGAAGAGCACAGCCTTCACATGCCCCCCGAGAGCTACCACCCCCGCTATCCGTCCTTCACCTCACATGGGCAGCTGGCGATGGGCACCCCGCTTCACCGAGGCGGAGTGCTGTGCCAGCTTCTCGACCAGCCCACAGAGGACACTTTCACCaaagaaagaaagaacgaaagaaaaaaggacaagAAGAACGAGGAAACGTTTCAAACTCGAAAAAACACACCAACGAGTGAAGACACACCAGTTTGGGTGGAGTGGGGGGGCGGAGTGCGCCGTGTCTGGGAACCAGTGGGAACGGGAGATGGGAGACTTGGCGACGGACACATCCTGGCTCTGCCCATCTCGGCCGCTGTTGACTTCCAGAGCACAAtTCTTCCACTGGGCAGAACTCCCCTTCCCATCATCCTCTGCAGCGTGAGTAAAGTCCTTCAGTCAGCACCGATTGAGCCTGGCAACCAGagcctgcacccccccccccccccaacctcctcctctcctcctctcctcccccctccctccgtCACACGCGTGTCAGAGCCGTGGACTGCAGCTGTACAGTTCATGTGATACCAGCATATGTACATAGACTTCAGAATACAacgaaaaaaacacacacaaaaaacacacgaaaaaaacaagaaaagaggaaaaaacacaggACAAAGAAACGgttattattaagaaaatatgcACTGAAATGATTATTTacgtgaaaagaaaaatatggaaAGGGTTTATGacatatttattgtacataactgttttattttaatctatgtATGGCATATCACGTTTTATCCATCAGATGTGGTTTTGTGGTGTGATTTTtggcatgttttctttttatatagtttttctttaaaaaaattaaataaaataaaatgctgtgcGCACCCCAAagaaattgatttatatatctatatctctatagatggatatatatatataaggaagaacaacaaatatttctaaatgatttttTATGATGATAACTGTTGaactccccctttctctccctgtctgttgTGTAAAGCGATTTTTCTGTGTTGAGGTGATGAATCTCAGGGTGTAGACTGgacttgttcttttctttttctgttcttttttcttttccgaACTCTCAATGTGTTGTAAGGTGGTTTGTGCGATGGAATATTGTATTGTCTGTTACATATCATACATCTGCcgtgcatatatttaaatacacattcaatTGAGACCATTGCTAAATAAA

Function

GO: NA

KEGG:

id description
K22592 AHDC1; AT-hook DNA-binding motif-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010904 True 6508 mRNA 0.58 8 3592656 3611545

Neighbor

gene id symbol gene type direction distance location
AMCG00010902 NA coding downstream 4561 3577231 ~ 3588095 (-)
AMCG00010899 NA coding downstream 68079 3514642 ~ 3524577 (-)
AMCG00010898 fam76b coding downstream 84661 3499002 ~ 3507995 (-)
AMCG00010900 NA coding downstream 96818 3485541 ~ 3495838 (-)
AMCG00010892 NA coding downstream 109033 3474632 ~ 3483623 (-)
AMCG00010909 NA coding upstream 404053 4015598 ~ 4020921 (-)
AMCG00010910 NA coding upstream 417257 4028802 ~ 4058729 (-)
AMCG00010914 dnali1,LOC107733506,LOC107587750 coding upstream 543486 4155031 ~ 4167037 (-)
AMCG00010917 pou3f1,LOC103364690 coding upstream 678511 4290056 ~ 4291183 (-)
AMCG00010919 rragc,rragca,LOC107700741,LOC107716860,LOC107704952,LOC106605136,LOC107730935 coding upstream 946008 4557553 ~ 4569654 (-)
G103006 NA non-coding downstream 167887 3420888 ~ 3424769 (-)
G102920 NA non-coding downstream 322887 3268542 ~ 3269769 (-)
G102890 NA non-coding downstream 431144 3161097 ~ 3161512 (-)
G102889 NA non-coding downstream 431759 3160583 ~ 3160897 (-)
G102888 NA non-coding downstream 432620 3159837 ~ 3160036 (-)
G103050 LOC103376870 non-coding upstream 172712 3784257 ~ 3784631 (-)
G103087 NA non-coding upstream 527075 4138620 ~ 4139637 (-)
G103094 NA non-coding upstream 538954 4150499 ~ 4150917 (-)
G103095 NA non-coding upstream 540973 4152518 ~ 4152748 (-)
G103149 NA non-coding upstream 813809 4425354 ~ 4425572 (-)
AMCG00010901 NA other downstream 17841 3553986 ~ 3574815 (-)
G102990 NA other downstream 173480 3320813 ~ 3419176 (-)
AMCG00010895 NA other downstream 265097 3321376 ~ 3327559 (-)
G102902 LOC104921322 other downstream 410037 3179970 ~ 3182619 (-)
G102774 NA other downstream 831392 2758478 ~ 2761264 (-)
G103112 NA other upstream 558248 4169793 ~ 4185974 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other upstream 1031107 4642652 ~ 4650406 (-)
AMCG00010937 NA other upstream 1504170 5115715 ~ 5129141 (-)
AMCG00010939 NA other upstream 1522508 5134053 ~ 5140509 (-)
AMCG00010946 NA other upstream 1672785 5284330 ~ 5325424 (-)

Expression


Co-expression Network