AMCG00010917 (pou3f1,LOC103364690)


Basic Information

Item Value
gene id AMCG00010917
gene name pou3f1,LOC103364690
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4290056 ~ 4291183 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010917
ATGGCTACAACAGCGCAGTACATCCCCAGGAATAACTCTTTGCCTTCCAACCCGTTAATGCATCCCGACTCGGACAGGATGCATCAGGGGACGACCTACAGAGAGGTGCAGAAGATGATGCACCACGAGTACTTGCAAGGACTGGCGACCAACACGGGCCACCCGATGAGCCTCACCCACCACCAGTGGCTCCCCACGTCCAACAGCGACTGGACCAGTGCCACCCACCTCGGCCAGCCCGAGCACAACAAAGCCAGCGTGCAGGCCAGCCGGGAGGACCTGGCGGGCGGCTTTCACCACAGGTCCCACCTGGTGCATCAGCAGACACAGAGCAGCCACCACGGATCATGGGCGCCCACGACCACCCATCACCTGTCTCCCCTGTCCCCCGCGTCCAACGGCCACCAGTCCCTGGTCTATTCCCAGTCGGGCTACACCAATCTCAATGCCATGCTGAGCCCGCAGCCGTTTGAAGCCTTACAGCTGAGTTTCAAGAACATGTGCAAACTTAAGCCGCTGCTAAACAAGTGGCTGGAGGAGACCGACTCCAACACGGGCAGCCCCACGAATTTGGACAAGATAGCCGCGCAGGGCAGGAAGCGCAAGAAGAGGACCTCCATCGAGGTCGGGGTCAAGGGCGCCCTGGAGAACCACTTCTTAAAATGTCCCAAACCCTCTGCCCACGAAATCACCAGCCTGGCGGGGACTCTGCAGTTGGAAAAGGAAGTTGTGAGAGTTTGGTTTTGCAACagaagacagaaagagaaaagaatgaCTCCCGCCGGGGTCCCGCACCCGAGTATGGAGGATGTATATTCACAAGCAGAGACCCCCCCTCTCCACCACACACTGCAGACCTCAGTACAGTGA

Function

symbol description
pou3f1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development; cell differentiation; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including forebrain neural rod; hindbrain neural keel; nervous system; neural plate; and presumptive diencephalon. Orthologous to human POU3F1 (POU class 3 homeobox 1).

NR:

description
PREDICTED: POU domain, class 3, transcription factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010917 True 870 mRNA 0.59 2 4290056 4291183

Neighbor

gene id symbol gene type direction distance location
AMCG00010914 dnali1,LOC107733506,LOC107587750 coding downstream 123019 4155031 ~ 4167037 (-)
AMCG00010910 NA coding downstream 231327 4028802 ~ 4058729 (-)
AMCG00010909 NA coding downstream 269135 4015598 ~ 4020921 (-)
AMCG00010904 NA coding downstream 678511 3592656 ~ 3611545 (-)
AMCG00010902 NA coding downstream 701961 3577231 ~ 3588095 (-)
AMCG00010919 rragc,rragca,LOC107700741,LOC107716860,LOC107704952,LOC106605136,LOC107730935 coding upstream 266370 4557553 ~ 4569654 (-)
AMCG00010921 NA coding upstream 283133 4574316 ~ 4575551 (-)
AMCG00010920 rhbdl2 coding upstream 289668 4580851 ~ 4589405 (-)
AMCG00010924 akirin1,LOC107700743,LOC107730931,LOC107704951 coding upstream 301719 4592902 ~ 4604694 (-)
AMCG00010923 NA coding upstream 326248 4617431 ~ 4618522 (-)
G103095 NA non-coding downstream 137308 4152518 ~ 4152748 (-)
G103094 NA non-coding downstream 139139 4150499 ~ 4150917 (-)
G103087 NA non-coding downstream 150419 4138620 ~ 4139637 (-)
G103050 LOC103376870 non-coding downstream 505425 3784257 ~ 3784631 (-)
G103006 NA non-coding downstream 865287 3420888 ~ 3424769 (-)
G103149 NA non-coding upstream 134171 4425354 ~ 4425572 (-)
G103309 NA non-coding upstream 1040549 5331732 ~ 5334257 (-)
G103329 NA non-coding upstream 1068792 5359975 ~ 5378226 (-)
G103362 NA non-coding upstream 1267494 5558677 ~ 5615853 (-)
G103473 NA non-coding upstream 2093298 6384481 ~ 6386604 (-)
G103112 NA other downstream 104082 4169793 ~ 4185974 (-)
AMCG00010901 NA other downstream 715241 3553986 ~ 3574815 (-)
G102990 NA other downstream 870880 3320813 ~ 3419176 (-)
AMCG00010895 NA other downstream 962497 3321376 ~ 3327559 (-)
G102902 LOC104921322 other downstream 1107437 3179970 ~ 3182619 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other upstream 351469 4642652 ~ 4650406 (-)
AMCG00010937 NA other upstream 824532 5115715 ~ 5129141 (-)
AMCG00010939 NA other upstream 842870 5134053 ~ 5140509 (-)
AMCG00010946 NA other upstream 993147 5284330 ~ 5325424 (-)
G103395 NA other upstream 1413587 5704770 ~ 5748564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G242539 LOC106582989 unknown NC_048567.1 CM023221.2 28726970 ~ 28730375 (-)
mexican tetra (Astyanax mexicanus) G204217 NA non-coding NC_035920.1 CM008323.1 9018906 ~ 9049811 (-)