AMCG00010920 (rhbdl2)


Basic Information

Item Value
gene id AMCG00010920
gene name rhbdl2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4580851 ~ 4589405 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010920
ATTCCATCCAAATAACTTATTCATTAATGCGACTTCATCATAAAtccgtgtgtgtctgtgcaaaGGGAAATGCACGGCTCTGTAGCTGTACTCGGGAAGGCTAAACAAACAGTcgcctgtttgtgtgtgaagggGGAGGAAACTGCAAGGAAAAAACAGCCAGGACCCATAATTAAGATGgcaggaagaaggaaaaaaagtatcAGCCCTGACGCGGTCCTCCTGTGTGTGTAGGTTCCTGCCCAGATAGCAGGATGATTTGAATCATTGTTATCAGATGCAAACGCAGTGAACAGGGATGGGATTGCATGTGTAAAAGTCTGCCGTCTGGACTGAAGTATTAACCCAGGAACTATGGATCCAGAAGAAGGGAGTCCATTTACTCCAGACGCAGAGCGGGTCGAGGCGGACGATGTCGGGGATTCCAAGACCCGTACGGACCCCGAGGAAGAGACCGATGCAGGGTGTGGGTGGTGCGAACGCTTCCACATCTCTGTCTCCAAGTGGATTCTTCCGGAAGACCACAGAGAGAGGTATCTGGAAAGAGCCAACTGCTTCCCCCCTCCCATTTTCATTATTCTCATCAGCATCGCGGAGCTGGCCGTGTTTATCTACTATGCTGTTTGGAAGCCCCAAAAGCAGTGGATCACCCTCGGCGTGGGCATCTGGAACAGTCCGCTGACCTACCGGCCGGATATGAGAAAGGAGGCCTGGCGCTTCGTCTCGTACATGTTTGTCCACGCTGGGGTGGAGCACATTGTGGGCAATCTGATCATGCAGCTGTTGCTGGGCATCCCTCTGGAGCTCGTCCACAAGGGCTTCGAAGTGGGCATGGTGTACCTCTCGGGAGTCATCGCAGGTTCACTTGCCAGCTCCATCTTTGACCCCTTAAATGCCCTCGTAGGGGCATCAGGCGGTGTGTACGCCCTCATGGGGGGGTACTTTATGAATGCTGTTGTGAATTTCAGGGAGATGATTCCGCTGCTTGGAATTTTCAGAATTTCAGCAATTGTTCTCATCGTGGGGACAGATGTGGGATTCGCTCTGTACAGGAGATTTGTGGTTCACGAGGCCGGACTTGCGGTGTCCTTCGTGGCTCACATCGGGGGCGGCGTGGCTGGAATGACGGTGGGCTACGTGTTCTTCAGCAACTACAACCAGAAACTCCTCAAAGACCCCAAGTTCTGGGTCTGCATAGTGGGCTACATCGTCTTCTTCCTCTTCGCCGTGCTTTTCAACATCTTTTTATCTCCAGCTCCAGTCTGACCTCCCCTCCCTGCAATCTGCATCGTCAggaaggaagagggagaggtTTGGAAGCAAGTTTGTGTTACAAACTCTCGGGTCATACGAGACAAGATCACTTTTATTTGACCCGGTTGTGTCTGCGTTTCTCCTCCAGACGATGCCCTTTCCATCTCCTCAGGAAGACATTCTAGCATTAAATTGGACTGTTAATTAGACTGTTAAAAGTCTGGACTTTTAGACCagaattttatatataaaacaaccagctgtaaaatactttgttgaaTTTATGATGTTGTAAAACTGATTttagaatagtttttttgtgtgtgtgtcttggatTAATAAGCATTTTTTTGTTGCATGTTCAGCTGGTCTTAATTTGTctcctgtttattttatactgaaGACTATTATTGATCTACCTCACCAAGATATTGGTGCTAGGAATActaccttttaaaaatacacctaATCTTGTTGAAAACCGACACTATAGTTATTTTGGGGGGTAAGTGAAAACTGGGGGAAATTATTCTTAATTATGATACTCCATACAGGGTATAAGCTGTTGGGAAGGTTATCCCTGTGTTGTGTAAATGGGGTGTAAAACAAACTCCCCACAGTGGGTAGTGTAGCACTAACAAGTCTCCTTTTATACAAGACACGGATGTTGATTCCAGGTCTCCAGTTTGGTTTACTGAAGGTTTATTGATTTCAAACCTGAAGAAGTTTGCATTTTGCAATCGTTGCCAAACAGTCTATCAGTTCAGTGATTATTAAAGTAAATGCACATTTCCTGTACCGTGTTGTTGATTCGCTGTACGTTGATGGATAAACCAAAGGAAGCAGATTTTAATAAACTGTACGAATGCTGA

Function

symbol description
rhbdl2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; otic vesicle; pectoral fin; pharyngeal arch; and sensory system. Orthologous to human RHBDL2 (rhomboid like 2).

NR:

description
PREDICTED: rhomboid-related protein 2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010920 True 2126 mRNA 0.46 9 4580851 4589405

Neighbor

gene id symbol gene type direction distance location
AMCG00010921 NA coding downstream 5300 4574316 ~ 4575551 (-)
AMCG00010919 rragc,rragca,LOC107700741,LOC107716860,LOC107704952,LOC106605136,LOC107730935 coding downstream 11197 4557553 ~ 4569654 (-)
AMCG00010917 pou3f1,LOC103364690 coding downstream 289668 4290056 ~ 4291183 (-)
AMCG00010914 dnali1,LOC107733506,LOC107587750 coding downstream 413814 4155031 ~ 4167037 (-)
AMCG00010910 NA coding downstream 522122 4028802 ~ 4058729 (-)
AMCG00010924 akirin1,LOC107700743,LOC107730931,LOC107704951 coding upstream 3497 4592902 ~ 4604694 (-)
AMCG00010923 NA coding upstream 28026 4617431 ~ 4618522 (-)
AMCG00010926 NA coding upstream 64044 4653449 ~ 4658316 (-)
AMCG00010928 NA coding upstream 72223 4661628 ~ 4691552 (-)
AMCG00010929 NA coding upstream 106614 4696019 ~ 4702450 (-)
G103149 NA non-coding downstream 155279 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 428103 4152518 ~ 4152748 (-)
G103094 NA non-coding downstream 429934 4150499 ~ 4150917 (-)
G103087 NA non-coding downstream 441214 4138620 ~ 4139637 (-)
G103050 LOC103376870 non-coding downstream 796220 3784257 ~ 3784631 (-)
G103309 NA non-coding upstream 742327 5331732 ~ 5334257 (-)
G103329 NA non-coding upstream 770570 5359975 ~ 5378226 (-)
G103362 NA non-coding upstream 969272 5558677 ~ 5615853 (-)
G103473 NA non-coding upstream 1795076 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 1924458 6513863 ~ 6514123 (-)
G103112 NA other downstream 394877 4169793 ~ 4185974 (-)
AMCG00010901 NA other downstream 1006036 3553986 ~ 3574815 (-)
G102990 NA other downstream 1161675 3320813 ~ 3419176 (-)
AMCG00010895 NA other downstream 1253292 3321376 ~ 3327559 (-)
G102902 LOC104921322 other downstream 1398232 3179970 ~ 3182619 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other upstream 53247 4642652 ~ 4650406 (-)
AMCG00010937 NA other upstream 526310 5115715 ~ 5129141 (-)
AMCG00010939 NA other upstream 544648 5134053 ~ 5140509 (-)
AMCG00010946 NA other upstream 694925 5284330 ~ 5325424 (-)
G103395 NA other upstream 1115365 5704770 ~ 5748564 (-)

Expression


Co-expression Network