AMCG00010922


Basic Information

Item Value
gene id AMCG00010922
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4634472 ~ 4642403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010922
ATGCTGGAGATCACACCGAGTAAACACCACATCCGGGCTCCGGCCCCAGCGCCGTGTTTTCCCCTGACGTCACCGGTGTGGCAACAGGCGTCTGCGCGAAACAAAAGCCGCTCAGCGATTGGCTGGCCGCCCGCAGAGCCGCTCTCCCATTGGCCGGCGCCGAGGCACTGCTTGGTACATGATCGGAGTCGGGCAGCCATTTTGTACCAAACAACTcggagagaggaagaaggagCAGCACTACAACTTCACTTCAGTGCTCAGCGCTTCCACTGGGGTTTATTCTTGTACACCGACCACCGCACCAGAGATATACCTAATCTGACACAACACCGCCAGACGAGGGGATCCGTGAACGGCCAGCCTGAGGAAGTCGTTCCGCGGCTTCTGCTACAGCCGAGCGCCGGGAGGATTGATGTTCGGCTCGGCGGCACGGCCCGACACCGCTGTACGGCACATGAGCGCCCCGAGTCCCGCAGGCCCCACAAGAGCAACCCGAAGCGGCTTCATTTCGACATCGAGGACCTGGAGCCCGGTGACAGCTGGTATAAGAGCAGGATGGGAGGAGGCGAGAGATACAACATTCCAGTTTCCCACCCGGAGCACGGGCTGCTGGTGAAGAACCACCATTTGAACGGCAGCAAGCAGCGCCACAAGGACCAGAACGCGCCGGTGGCGAGAGCCGGTCAGCCCAGGAAGGGCCTCCCCCGCGGGGCTGACGTGCGGCAGGCCGCACACGCAGAGAGGAACACTGTGCGCTTTGCCACGTACAACCAGAACTGGGACACCGCCATGGCCCACTTCAACACTCTGCTTAAGTCCCAGTGCAACCAGAACTACGCCGGGGCCAAGTTCAGCGAGCCGCCGTCACCAAGTGTTCTTCCAAAGCCGCCCAGCCACTGGGTCTCTCTTCCCCTAGCGCCTTGTGATCACCGTGAGGTCATGACCTTCCAGCTCAAGAGCCTCCTGAAGGTCCAGGCCTGAGGAGCTCGGTCAGTCGATGCGACTCTCCCATGTGTCCGCCTGCCAGTAACgctgcagagctgtgtgtggatgagtgtgtgtgtgtgggatgaGTGCGtgaggcgtgtgtgtgtgtgtgtacagataTTTGACGGTGTGGGTAAAAAAGTTCGGTGAGTCTCAGTCTCTGAGCGTTTTAAACTGTGTGGTTTAGTATTGCAGCGGCGCAGACTTACTGACTGGTCAGCACCGGGGAGAGCGCATTCTCATTAAGAACTGGATTTGCTAAGCTTTTGCTTGCCTTTTCTTTCCCAAACTGGCCATAGTTACTTAAAGATGGAGGGTAGGCTTCTCAAAATCTACCCCCCGcccaatctttttcttttttctttttttaattctcagatCAGTTTTTCAAACCTTGGATTTTATTCACTTAAatgtaaagagagaaaaaggaagatGGAAAGCATAGCAACTCTGTCCCATGAACTTGAACAGGgctcaaaattaatattttccttagATGGGTAGGTAACAGGAGCCACTTGACGATCACAACCAGCAGATGGTAGACGAGCTCGCTGTCCCGTGCACAGATGACACTTTAAACCTCCGAGCTGACGTCTCGAGAGCCTTGCCTGCTCCACGGACTCACTGCAactcttgtatttttatttttttaaggcgCTGTGCGCACTGCACTATAGGAGTTGCTTGGGTACAAGTCTGTAAGTGTTCTGCAATCACTTCCCCTTTTATCTAGGCCAATTTATATCAAAGTACACGCACTAGTGTGTTTACCAAAGCAATACACGTTTCCCTCTCAGACTCAGTTTGAAGTGCCATACAGACCAGTACTGAAATTAGAGTAAGTCTAGAGTTATTTAAGCCTCTGGGactttgtgtgttttatcttttgtatattttttccttttaaaaagctTAATCGCAGATAATTTGCAAGAGGACACGGTTGTAGAGATGAACTCTGTCAGCACGGTCTCTGCAGCATTGTTTGCTTTCAAGCATTTTGAAGGGAATGTATTTGTGTGAATGTTTAATATGGCACAGAGGACTAAAGCTGTTGGTTGTGAATTCAGCACTTACGTTTACATAAGACGGTCTCAAGGTGGCTTGCCAATATGCTCTAACTTCTCACTGCCTTGAACTTGTATTCTTCTTGCACTGGTATCGGATTATGTACAAATGCTAGCGTGCTCAATCACCCCTCAGAGACTGTTCTCTCATTGTACGAATCCCTCTAATAACGTTTTAATTTTGAGCCTTGTAAACCAGAGTTGGACACGTGTCTTTTCTTTGCAAGTTGGTAGCTATTGCACCCATGAAGTGCAAGCCTGTTTCTAAAGAGccatgtaaatgaaatgtaaaacttgtagcatatatatatattttgcagggATTTTGACCTGCAGCATAAGTATTTTTTAGTAAGAATGTAATGGTCATGCCAAGGACGTGACTAGAAAAAATGCTgaagatattttgtttatataaaaaagaaaaaaagaaaaaagaaaaagattgcGATGAGCACGTGAGCTGATGCCCCTGCACTGTGTAGCGTTCCCAGCGCTCTTGCACAtacgttttttaatttttaaaagatgttttgTATTGTGGTCAGTGCAAaagtttttttaagtaaaaatgatttttaactAACATTTTGCatgtatgaaaaaaacattttatcagCCCGAAAAATAGCACAAAAATCTTTCGCTCACCGTCGAGTTGATGAGGACCTATGCTGGAATTTTAACAATCTGTGGCCTTAGTGTGTCACTGGCTGTCGGGGCGGGTTAGTACACTCGATCCCAGCCGCCTTTTATAATGAGTTTTTCATATTGTAGTGTTTTGTAGTTGtagcaattaatttaattgttcatCTTTTGGTTATTAGGGTAGAATTGTAATTGTCTGGTGAGTTCAGCCATCACAACACTGAAGtacttatgttttttgttttttttgtacttgttcTCTTCATACATGCGAAATAGCgttgaaaatgtaaacaattgGCTGCAAATTAGAATCCCCAACTATTGTCACATCGATGTAAACCTGGGTCCCACAACCAAATTCGTTTCAAAATCTAAACCTCAATTGAAATATTGCACTATCGATTTAAATTGGCTgctaaaatcaataaaatcccTTTCCTTGCCCCCCTAATACTTGTCTGGTGTTTCATTGTGCTTGATGTGATATTTCCAGTCCATTGATTTGG
>TU128904
ATTTTGTACCAAACAACTcggagagaggaagaaggagCAGCACTACAACTTCACTTCAGTGCTCAGCGCTTCCACTGGGGTTTATTCTTGTACACCGACCACCGCACCAGAGATATACCTAATCTGACACAACACCGCCAGACGAGGGGATCCGTGAACGGCCAGCCTGAGGAAGTCGTTCCGCGGCTTCTGCTACAGCCGAGCGCCGGGAGGATTGATGTTCGGCTCGGCGGCACGGCCCGACACCGCTGTACGGCACATGAGCGCCCCGAGTCCCGCAGGCCCCACAAGAGCAACCCGAAGCGGCTTCATTTCGACATCGAGGACCTGGAGCCCGGTGGGAGAGGAGAAATTAAAGCGACCCGACTTCTGCACAACGAAGAGGTGACAGCTGGTATAAGAGCAGGATGGGAGGAGGCGAGAGATACAACATTCCAGTTTCCCACCCGGAGCACGGGCTGCTGGTGAAGAACCACCATTTGAACGGCAGCAAGCAGCGCCACAAGGACCAGAACGCGCCGGTGGCGAGAGCCGGTCAGCCCAGGAAGGGCCTCCCCCGCGGGGCTGACGTGCGGCAGGCCGCACACGCAGAGAGGAACACTGTGCGCTTTGCCACGTACAACCAGAACTGGGACACCGCCATGGCCCACTTCAACACTCTGCTTAAGTCCCAGTGCAACCAGAACTACGCCGGGGCCAAGTTCAGCGAGCCGCCGTCACCAAGTGTTCTTCCAAAGCCGCCCAGCCACTGGGTCTCTCTTCCCCTAGCGCCTTGTGATCACCGTGAGGTCATGACCTTCCAGCTCAAGAGCCTCCTGAAGGTCCAGGCCTGAGGAGCTCGGTCAGTCGATGCGACTCTCCCATGTGTCCGCCTGCCAGTAACgctgcagagctgtgtgtggatgagtgtgtgtgtgtgggatgaGTGCGtgaggcgtgtgtgtgtgtgtgtacagataTTTGACGGTGTGGGTAAAAAAGTTCGGTGAGTCTCAGTCTCTGAGCGTTTTAAACTGTGTGGTTTAGTATTGCAGCGGCGCAGACTTACTGACTGGTCAGCACCGGGGAGAGCGCATTCTCATTAAGAACTGGATTTGCTAAGCTTTTGCTTGCCTTTTCTTTCCCAAACTGGCCATAGTTACTTAAAGATGGAGGGTAGGCTTCTCAAAATCTACCCCCCGcccaatctttttcttttttctttttttaattctcagatCAGTTTTTCAAACCTTGGATTTTATTCACTTAAatgtaaagagagaaaaaggaagatGGAAAGCATAGCAACTCTGTCCCATGAACTTGAACAGGgctcaaaattaatattttccttagATGGGTAGGTAACAGGAGCCACTTGACGATCACAACCAGCAGATGGTAGACGAGCTCGCTGTCCCGTGCACAGATGACACTTTAAACCTCCGAGCTGACGTCTCGAGAGCCTTGCCTGCTCCACGGACTCACTGCAactcttgtatttttatttttttaaggcgCTGTGCGCACTGCACTATAGGAGTTGCTTGGGTACAAGTCTGTAAGTGTTCTGCAATCACTTCCCCTTTTATCTAGGCCAATTTATATCAAAGTACACGCACTAGTGTGTTTACCAAAGCAATACACGTTTCCCTCTCAGACTCAGTTTGAAGTGCCATACAGACCAGTACTGAAATTAGAGTAAGTCTAGAGTTATTTAAGCCTCTGGGactttgtgtgttttatcttttgtatattttttccttttaaaaagctTAATCGCAGATAATTTGCAAGAGGACACGGTTGTAGAGATGAACTCTGTCAGCACGGTCTCTGCAGCATTGTTTGCTTTCAAGCATTTTGAAGGGAATGTATTTGTGTGAATGTTTAATATGGCACAGAGGACTAAAGCTGTTGGTTGTGAATTCAGCACTTACGTTTACATAAGACGGTCTCAAGGTGGCTTGCCAATATGCTCTAACTTCTCACTGCCTTGAACTTGTATTCTTCTTGCACTGGTATCGGATTATGTACAAATGCTAGCGTGCTCAATCACCCCTCAGAGACTGTTCTCTCATTGTACGAATCCCTCTAATAACGTTTTAATTTTGAGCCTTGTAAACCAGAGTTGGACACGTGTCTTTTCTTTGCAAGTTGGTAGCTATTGCACCCATGAAGTGCAAGCCTGTTTCTAAAGAGccatgtaaatgaaatgtaaaacttgtagcatatatatatattttgcagggATTTTGACCTGCAGCATAAGTATTTTTTAGTAAGAATGTAATGGTCATGCCAAGGACGTGACTAGAAAAAATGCTgaagatattttgtttatataaaaaagaaaaaaagaaaaaagaaaaagattgcGATGAGCACGTGAGCTGATGCCCCTGCACTGTGTAGCGTTCCCAGCGCTCTTGCACAtacgttttttaatttttaaaagatgttttgTATTGTGGTCAGTGCAAaagtttttttaagtaaaaatgatttttaactAACATTTTGCatgtatgaaaaaaacattttatcagCCCGAAAAATAGCACAAAAATCTTTCGCTCACCGTCGAGTTGATGAGGACCTATGCTGGAATTTTAACAATCTGTGGCCTTAGTGTGTCACTGGCTGTCGGGGCGGGTTAGTACACTCGATCCCAGCCGCCTTTTATAATGAGTTTTTCATATTGTAGTGTTTTGTAGTTGtagcaattaatttaattgttcatCTTTTGGTTATTAGGGTAGAATTGTAATTGTCTGGTGAGTTCAGCCATCACAACACTGAAGtacttatgttttttgttttttttgtacttgttcTCTTCATACATGCGAAATAGCgttgaaaatgtaaacaattgGCTGCAAATTAGAATCCCCAACTATTGTCACATCGATGTAAACCTGGGTCCCACAACCAAATTCGTTTCAAAATCTAAACCTCAATTGAAATATTGCACTATCGATTTAAATTGGCTgctaaaatcaataaaatcccTTTCCTTGCCCCCCTAATACTTGTCTG

Function

GO: NA

KEGG:

id description
K18751 PNRC2; proline-rich nuclear receptor coactivator 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010922 True 3220 mRNA 0.47 4 4634472 4642403
TU128904 False 3024 TUCP 0.46 3 4638432 4642358

Neighbor

gene id symbol gene type direction distance location
AMCG00010918 NA coding upstream 61929 4570100 ~ 4572543 (+)
AMCG00010916 NA coding upstream 384424 4239933 ~ 4250048 (+)
AMCG00010915 fhl3,LOC107587754,LOC107716861,LOC107704953 coding upstream 405544 4220702 ~ 4228928 (+)
AMCG00010912 meaf6,LOC106589015 coding upstream 458472 4171483 ~ 4176000 (+)
AMCG00010911 snip1,LOC107700737,LOC107755266,LOC107597115 coding upstream 463464 4167178 ~ 4171008 (+)
AMCG00010933 NA coding downstream 436805 5079208 ~ 5080356 (+)
AMCG00010941 NA coding downstream 509433 5151836 ~ 5156195 (+)
AMCG00010936 NA coding downstream 517607 5160010 ~ 5160444 (+)
AMCG00010935 NA coding downstream 524191 5166594 ~ 5169607 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding downstream 612692 5255095 ~ 5274132 (+)
G103152 NA non-coding upstream 14816 4536337 ~ 4619656 (+)
G103150 NA non-coding upstream 196336 4437877 ~ 4438136 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding upstream 343792 4288023 ~ 4290680 (+)
G103035 NA non-coding upstream 1041065 3592668 ~ 3593407 (+)
G102959 NA non-coding upstream 1171969 3459862 ~ 3462503 (+)
G103258 NA non-coding downstream 491824 5134227 ~ 5140721 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding downstream 711366 5353769 ~ 5355664 (+)
G103333 NA non-coding downstream 813955 5456358 ~ 5460573 (+)
G103348 NA non-coding downstream 907655 5550058 ~ 5613434 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding downstream 974655 5617058 ~ 5652821 (+)
G103078 NA other upstream 550886 4049938 ~ 4083586 (+)
G103030 NA other upstream 1054195 3577235 ~ 3580277 (+)
G102947 NA other upstream 1190938 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 1206043 3421082 ~ 3428429 (+)
G102921 NA other upstream 1235966 3331584 ~ 3398506 (+)
AMCG00010979 NA other downstream 1744633 6387036 ~ 6395484 (+)
G103542 NA other downstream 1999580 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 2249994 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 2429030 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 3905960 8548363 ~ 8552605 (+)

Expression


Co-expression Network