AMCG00010925 (srsf10,LOC108426370,LOC101486875)


Basic Information

Item Value
gene id AMCG00010925
gene name srsf10,LOC108426370,LOC101486875
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4642652 ~ 4650406 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010925
GTTTTATAGTGTCGTTTTACAGTAAGCATCTAGAATTCGCATTTTGACAAGAGTGGCATTAACATCCGTATGTCCCGAACGGCGATCCGTACATATAGACAAACCTTGGCCGCATAAAAAGCACTGACAGGAGTCTTCTGCAGGGGATTGGTCGCATAACAAATGAGTGACAAGCCGTCATTGCGAAGCGATTGGCTGCCTGCAACACTGACCCCGCCCACATTCCAACGTCTGCGGCTCTGCAGCGGAAATCACGTGTCTCCGCTGCCCTTGCGCTACGTCTTTACCGCGCCTGCGCAGTGCGCTCCtcgctgtgtttttttttaactgcgaTTGTTTCGGCGCCGGCCTCTCTCGCTCCGATAGCGCTCGTTGGGGAGACTTTTGTGGCCATGGCCAGGTACCTGCGGCCTCCAAACACGTCTCTGTTCATAAGGAATATCTCCGACGAATCCAGGCCTGAGGATTTACGTCGTGAGTTTGGTCGTTATGGGCCAATAGTAGATGTCTACATTCCAGTTGACTTCTATACTCGCCGGTCAAGAGGATTTGCATACATTATGTTTGAAGATGTGCGCGATGCAGAAGACGCTCTGCACAATCTGGACAGGAAGTGGGTGTGCGGCCGCCAGATCGAGATCCAGTTTGCGCAGGGCGACCGAAAAACGCCCAATCAGATGAAGATGAAAGAGCGCAGATCCCCGCGCAGCTTCTCCCGCTATGACGACTACGACCGGGATGGCCGGCGCAGGCGCTCCAGGAGCAGGAGCTACGAGAGGAGACGCTCCCGGAGCCACTCCTACGAGAGGCGGCCGCGGAGGTCAGAGAGCCCCGGAGACTCCCACGGCCGATCGTACGGGAAACACAGACGAAGCAAAAGCCATGAGAATGAGAGacCCAGATCGAAGGCTAAGAAGGAGGCCAAGGTCAAATCCCGGTCCAGGTCCAAGTCCCCGACCCCGCCCGTGGAGGACTTCCAGCCCGCGGCCAACTCCCGCTCCCGCTCCGAGTCCCAGAAAGATTCCCGCTTGAGGTCGCCCTCCCGCTCCCGCTCCAGGTCCCTGTCCAGATCGCGCTCCAGGTCCCGGTCCTGGGCGGGTCGCAAGTCCGGCGGCCATTAGACGGATcttaatccccccccccaccccctgacCCATTTGCTTTCGTTTTGACGTATCGGTCACGGCTTcggttttaatttttgtttcttcccccccccaccaaatgTGTCACGATGTCTTGAATACGCATCGGACCGGAGGAGACCCGCAGTATTTTTGTTCCACACGCCggtctgatgtttttttgtttcggGTTTAAAGCGAATGCTGCTCTAAAGATGGGCCCGACCAGCACCGCGATCCGGGGAAGTATTAATAAAGTGAGCAACGTTTCCGGGAACAAACCTCTGAGGAGCGGTTAGCCGGAGCTGGAATCTAAACTGTACGGTTGTTTTTTAATGGGCCACCTTTTATGCTAACCTGTATGATGTTTGGTTCCTTGTGTGCAAAcgtaaaatatgtttgtatttaacagACTATTCCCTAAAGaggctacatttaaaagtattttacagctGTCGACACTtaaggaacttttttttttttgtcttttgcttcGTGTAAACACGGAA
>TU128916
TGCGCTCCtcgctgtgtttttttttaactgcgaTTGTTTCGGCGCCGGCCTCTCTCGCTCCGATAGCGCTCGTTGGGGAGACTTTTGTGGCCATGGCCAGGTACCTGCGGCCTCCAAACACGTCTCTGTTCATAAGGAATATCTCCGACGAATCCAGGTGAGCGATGGCCGTGCGCTGTGCTGCTCTTCTCCGCAGGAATGTGACCGGGCCCGGGCTGCAGCGGCGCGGGCCTCTCGGTCGGACGGGGGGCGGAGGGCCTGTGACGCGGGAGGGACTCGGCTGTATGTGTTCGTGTGTTCGTGTgttcctgtgtttctgtgtttattcgTCGCAGGACGACTTTTTGGCCACGCATGGACCCGCGCGCTCCTGTCCGCCGCGCAGTCGCGTGCTGTGCGGGGcgcgcgtgcgtgcgtgcgtggcATCGGCATCTCCCGCCGCGTGCAGGCCCGCATTCACACATTAACACTTTCTCCGCCTCGCAAGTGTGCAGTTAGGAGGCCATCGTTTTAAAATCTCACATTATCGATGTATCAATTGAAGAAGTGCTGGGAATCCGTGAATCTGcgttttattcttattttctacAAACACCGAGCGAGTAACCATCGCTTGTGCGTGTTTTGTGATGCttgtattatattaaagtgTAGATCTCCGCTGAAGCAATGCACCAGCAGATTGCCTTCATTAAAACGAGCGTTACACCAATAGTGGGGAAGGGGGCGTCTGCCTGTACTTGCATGCCCAAAGACGTACATCAGTGCACAGTAGCGACCCTGTTATTTTAAGCTTTGACCGGATTAATATCCACCACaaagcatctctctctctgtctgacacatacagacacaaaccGTTTTATGTTAAGAATAATCAACCACGATTCTGCAGAATAAGTGAATATAGTTTTCGGCCACTCGTCGTGATATTGTGCACGTAGGAAGTATAAAAGTAGCTTCAGTTTCACTAAAGGGGATCTGGTTGAACAGCTGTAATGCGAGAGGGTTGGTGACAGTGGGGTGGTGGGAGAGGTGGGTTGTGTTCACTGGGACTCCAAGGCATGCAGATATGTGATCAGAAATTGACATGGGTGGGACTTTACAAGAGTGGTGTGCAGtgacatgattttatttttatcttgatCTAACATGAAGGCACTTTTCCTAATCTATTACTGCATGCAGTGACACAAACGTCATTTGCAATGATTCATCTTTAAAACCATCGCCTCCCTCTCAAAATCAAACCAATAAAAAGTACAGTGGTTTCACGACTTGGAATGTCCCATATACCCCTCATTATTATGGGGAATTGACCGTTCATCCAACTGCAGAATTGAAATCCTGCAAATGCAGTGCATATCAGTCAAATATGATTGTGGAAACTGCATTATCTGACATTCAGACACTGGCATGCTGGCACTTctgttaaatacaaaataaaaaaaaatgcatgggCTTGTGTCCACATGTGTGTGATTCCTCTGCGTGGTAAGTGAACCCTGTGGACCACTAACCGTGTAGATGTGTTTCACTGATAAGGCACATTATGTACCAACCAGTAAAATAAAGCTGCTATCATTTTACGGTGCTTTAGGCCTGAGGATTTACGTCGTGAGTTTGGTCGTTATGGGCCAATAGTAGATGTCTACATTCCAGTTGACTTCTATACTCGCCGGTCAAGAGGATTTGCATACATTCAATATCCTTTCTTCACAAATAAACTACTAACCTTTGCAGGGGGTAAAAGCAATGATTTTATCTGCAAGGGGGGATGTGatgcaaaatgtgaaatgttttggttttcttgtcTAGAGATTTTTCCCTTTTAGgtaaatataggcctatatatttaaCCACAGTTTGTCTTTTTGACATTTAAAGCTTTATTGATTCAAGCTTCCACTCTCAGACACATGTGGGAATTGCTTAAGGCAGAGTttgtaaacaaaaattaataatCGTAAAAGTTGGGCTGCTTTCAGGGATGGAAGAAAGAACACAATTGGAAAGCCGGGTGACCCATTTCAGGTCTTAATAGCTGTTGGTAATTTAAGTCAATAACTGGTTCTGATATTTATATCATTTTTCATACACCTGCCAACCTTAGACTTCCAGAGTAACCACAATGTACaaacgggtgacaaattaaacgAAAAACCAACTTAAAGTGTCTCGgtatggtggtggagagtgctgtcttaacacgtcggtccacaatcttCCATAGGTGTTCATCTGGGTTGAGAtgtggtgactgtgaaggccataacATATGAGTTgcatcattttcatattcatcacaCCATTgtgtgacccctcgtgcccaaTGGATggtgcattgtcatcctggaagagaccactcccatcaggatagaaatgtgtcaccacataaaggtgatcactcagagtaactttgtcatgatttgcagtgacccttccctctaaggggacaagtggacccaaaccatgccaggaaaatgccccctacagcataacagagcctccggaccccctcactgtagggtccagcagtcaggcctgtcccgttctcttggtggcccacacatgcactcgcccacttgtccagaatgtggtgaaggatgactcctctgaccagatcactttttttccacgtctctgtagaccagtgcagtttttgcaccactgaactctcaaatttgtctttgtaatgagggctTTATGCACTGGCaccttgatccaaaattgaggtcagctgggcatgctcagcatttgtatacatgccacagagcatgataggatgttaattgcttaattgtatcatgcagtacacctgtttggaggtgCATTCactatgttcctccactcatttattcaggtttttcctttaatttgtcaccgtTTGTATATAAAACCATATTCGgttacatttgttacatcttTTAAAACCTGTAATGAGTCAGTGTGGTATAAAATGAGATTTCCATCCCTGGATTTGGACTGAGATAAATGTTGTTCATGGGTTGAGTAGTTTTTACATGATTTCGGTAATGGGGGTGGGTTGGGAAAAGGGGAATATGAAAgtgttttatgaatgattgATTGTAGCTGTGTTTGTATTTAGGGATTCACAAAACGAAAATTACAAGTCCTGTCTCCTAACTTAAATTTCTTCTGTTGTTGCCCCAGACTATATAAAGCCTTACAGTTCTGGAGACCCCACAAAGAAAGTAAGCGAGAACCTATTAGAGTAGATTCCAAGAATTAAGACAAGCCAAAGACCACTTAAGGATCAGGCCTcaaggaaaagagagagggaaaggttGAAAATAAAGAGAATTTAAAGCTTGAAGAGACAAAGAGGAAAAAGGGACCAAAATGGGCGTCAAGGCTTCGATTTGTctgcaaaagagaaaaaaagattattGGTCAAAGCCAAGCAGGAAACCAAGTTCTTCTGGAAAGCGTTTAAAGAGTTAAAGGTCAAGATGAAGGTGAAAGTCAAGCATGTTTAAGGTAACAAACCTAATTTTTGTATCCTAcccaaaattatatttaatttgttaatttttgcAGATGACTTTAGATACTGTACAACCTTGGAGTTTGTAAACTATGAACCGTAAACTCACGAGCCCCGTAACTTTTCAACTacctattgtttttatttcaacctcttgtattctgttgtttttcctaAAGTGAGCCCTAATGGAGCTTAAACTTCACAAGAATGTTTGTTATAAAAcctgtttgccttttctttAATCCCCAGAAGAACCGCATGTTTAATGTCTAATGATTTCTGTATAAACCAGTGGCGTAGTGATAAAGCAACACCCCAAACCTGTAGCTGTTaagtgtgtagttgtgtgtgtgcaacCGTAGTATTCTACCCCCATCCCATGATCTCAAAACCTGTAAACAATAAAGCCTTAACAGCTCAGTATGTTTGAAGATGTGCGCGATGCAGAAGACGCTCTGCACAATCTGGACAGGAAGTGGGTGTGCGGCCGCCAGATCGAGATCCAGTTTGCGCAGGGCGACCGAAAAACGCCCAATCAGATGAAGATGAAAGAGCGCAGATCCCCGCGCAGCTTCTCCCGCTATGACGACTACGACCGGGATGGCCGGCGCAGGCGCTCCAGGAGCAGGAGCTACGAGAGGAGACGCTCCCGGAGCCACTCCTACGAGAGGCGGCCGCGGAGGTCAGAGAGCCCCGGAGACTCCCACGGCCGATCGTACGGGAAACACAGACGAAGCAAAAGCCATGAGAATGAGAGacCCAGATCGAAGGCTAAGAAGGAGGCCAAGGTCAAATCCCGGTCCAGGTCCAAGTCCCCGACCCCGCCCGTGGAGGACTTCCAGCCCGCGGCCAACTCCCGCTCCCGCTCCGAGTCCCAGAAAGATTCCCGCTTGAGGTCGCCCTCCCGCTCCCGCTCCAGGTCCCTGTCCAGATCGCGCTCCAGGTCCCGGTCCTGGGCGGGTCGCAAGTCCGGCGGCCATTAGACGGATcttaatccccccccccaccccctgacCCATTTGCTTTCGTTTTGACGTATCGGTCACGGCTTcggttttaatttttgtttcttcccccccccaccaaatgTGTCACGATGTCTTGAATACGCATCGGACCGGAGGAGACCCGCAGTATTTTTGTTCCACACGCCggtctgatgtttttttgtttcggGTTTAAAGCGAATGCTGCTCTAAAGATGGGCCCGACCAGCACCGCGATCCGGGGAAGTATTAATAAAGTGAGCAACGTTTCCGGGAACAAACCTCTGAGGAGCGGTTAGCCGGAGCTGGAATCTAAACTGTACGGTTGTTTTTTAATGGGCCACCTTTTATGCTAACCTGTATGATGTTTGGTTCCTTGTGTGCAAAcgtaaaatatgtttgtatttaacagACTATTCCCTAAAGaggctacatttaaaagtattttacagctGTCGACACTtaaggaacttttttttttttgtcttttgcttcGTGTAAACACGGAATCGTGGtcttccatttaaaatgaacaggtttttttttgtttttatatatataaatctatatatatatacctagaTTGTGACAAGTATTcacttaattgtattcattattgtgCCCCTGTTTTTGTGTAAATGATAGAGATCTATGTAAGAATTCAAGTAGGAAGATGAATATTCCTGTTTTTCGGTTGTGCTCTATATTGTTAGCCTGGGACAAGGAGGGAGATTATGCTGGGGCTGATTTcaagtgttgtttgtttgttctccataattgcatttttagtttttgggggagagattttcaattttgtaaCACTCAAtctattaaaatactgtatttttcagTTACAGTGTGTGGCATACGCGTGTGTCGGAAGCTGGTCAGTTAGTGATTTAAATCAATGGCCGTGGTGCTGTTTAATAGGGGGATGTGGATGAAAGTTCTCAATGTGTAGATTCAGTGGCCTCAGCAGGGTGAATGCCAATGATTTGTGAAGAAGcgaaaggaaaggaaaataaatctgggCTGGGGATTGTTTTGGAAAGGGGCAAAATACTGACCCATCCTGATGTTCAGAGCTCTTGCATTCATGTGGAAGTACAGCAGCTCTGTGCATCACAATCGGTCTGCTTTATTAATAAGTAATCCACAGACCTAATCGAGTGTAGACCAGCGGTGTGCAACCCCAAGCTGCAGCGTCAGCAGAGCTCTCCATTCGCACTGTGGCCTAATTGGACTTTTTGGCTTAAGAGGACCCATCTAAGAACACTTCCCCGTTCTGTAAGTGTGTATCGATTCAAGGAGAGAACTACAACCCTGCTTGATTACAGGAGGGGGTTGAATGGGAGGGTGGTGTATGGAGTAAAGGGGTGAAACACTGGAATATATTAAACCTTGTGATAATAAACATGACAGTTAACTCTTGCTGCTGCAGACCCAGGCCAGGGGCTGTTATAGTACAGGACACAAGTGCTCAATCTTCACACACCCCACATCCTTCTGAAATACCTTGTACACATcgaattttaaatgttcttatgaCCTGCCCGCTAAATTAAACAACTCCACTTGGTCCCAGGACCCGCAGTCTGGTTAACACGCGTCTCATTTCCACCACATTAAAGATTTCACACCGGATCGTGCATTTAGTCTCTCGCAACAAACTGCGCTTTAGTTCCGCAATCGACTCCACTCCTGAGCGTAAGGGCAGGCACGTTATAACTTGTGATGGAAGAGCTGAGAGTATCCAATGTTTGGGTTACCTTAAACACAAGAACACTGTAAATATTCACACTTTACTTTTTGTGTAGGAAAGCAGATCTTATGCAATGCATCTCCTGTAGATAGAAGCCTGCCTCCATCCTGTAAGAATTCCTTTTACTCTCCATCAGtgcagatatatatacacacaactgTACAGTAGTGGACCTTTTCTACACACATACTAAGCTCAAGAGCTTGCAGCAACTGTATATACTTGTCCTAGAATTGTCTTGTCACCCTCTGTAACTTTCAGTAAAGATTTTTCTTGACAATTCTCTCTACGCATGTTTTATTGTCCACcgtttttaaatggaaatctaAATGAATAAATTCCTTTATTACACACCAATGGAAATGATTGTTAAGAAAATGACAAATCTTCAGAAGGAAGGTATACTTAAGTTGggagttacatagaaatgaccATGTAACCATAGACCATgttgcgtgtgtgtatatacatataaatacacactgaattatatatgtgtgtgtttagt

Function

symbol description
srsf10 Enables RNA binding activity. Involved in mRNA splice site selection and negative regulation of mRNA splicing, via spliceosome. Located in nuclear speck. Biomarker of macular degeneration.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 10-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010925 False 1633 mRNA 0.53 6 4644413 4650406
TU128916 True 6767 TUCP 0.44 4 4642652 4650106

Neighbor

gene id symbol gene type direction distance location
AMCG00010923 NA coding downstream 24130 4617431 ~ 4618522 (-)
AMCG00010924 akirin1,LOC107700743,LOC107730931,LOC107704951 coding downstream 37958 4592902 ~ 4604694 (-)
AMCG00010920 rhbdl2 coding downstream 53247 4580851 ~ 4589405 (-)
AMCG00010921 NA coding downstream 67101 4574316 ~ 4575551 (-)
AMCG00010919 rragc,rragca,LOC107700741,LOC107716860,LOC107704952,LOC106605136,LOC107730935 coding downstream 72998 4557553 ~ 4569654 (-)
AMCG00010926 NA coding upstream 3043 4653449 ~ 4658316 (-)
AMCG00010928 NA coding upstream 11222 4661628 ~ 4691552 (-)
AMCG00010929 NA coding upstream 45613 4696019 ~ 4702450 (-)
AMCG00010927 NA coding upstream 73274 4723680 ~ 4736732 (-)
AMCG00010930 man1c1,LOC101464129,LOC100705345,LOC105006133 coding upstream 166327 4816733 ~ 4839059 (-)
G103149 NA non-coding downstream 217080 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 489904 4152518 ~ 4152748 (-)
G103094 NA non-coding downstream 491735 4150499 ~ 4150917 (-)
G103087 NA non-coding downstream 503015 4138620 ~ 4139637 (-)
G103050 LOC103376870 non-coding downstream 858021 3784257 ~ 3784631 (-)
G103309 NA non-coding upstream 681326 5331732 ~ 5334257 (-)
G103329 NA non-coding upstream 709569 5359975 ~ 5378226 (-)
G103362 NA non-coding upstream 908271 5558677 ~ 5615853 (-)
G103473 NA non-coding upstream 1734075 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 1863457 6513863 ~ 6514123 (-)
G103112 NA other downstream 456678 4169793 ~ 4185974 (-)
AMCG00010901 NA other downstream 1067837 3553986 ~ 3574815 (-)
G102990 NA other downstream 1223476 3320813 ~ 3419176 (-)
AMCG00010895 NA other downstream 1315093 3321376 ~ 3327559 (-)
G102902 LOC104921322 other downstream 1460033 3179970 ~ 3182619 (-)
AMCG00010937 NA other upstream 465309 5115715 ~ 5129141 (-)
AMCG00010939 NA other upstream 483647 5134053 ~ 5140509 (-)
AMCG00010946 NA other upstream 633924 5284330 ~ 5325424 (-)
G103395 NA other upstream 1054364 5704770 ~ 5748564 (-)
AMCG00010966 NA other upstream 1314727 5965133 ~ 5974307 (-)

Expression


Co-expression Network