XLOC_006064 (zmiz1a)


Basic Information

Item Value
gene id XLOC_006064
gene name zmiz1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30421472 ~ 30570859 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011976
GATATGTGAGTGAATTTGCCAAACACTGAACAAAGAGATCTCCTGCATCCTCCGGTCTGAGCTCTACTAAAGCAGACGAGGCCTGGCCAGAGGACCATGTGCTAATTAGAGAAGAACTTTAATGGCTTCCAGGTAGAGAGAAAGAGGCAGCAGTCAAGATGAACTCGATTCCTTCAATGGACAGGCACATACAGCAGACCAATGACAGGCTGCTGTGCATCAAACAGCACTTACAGAATCCGGCCAATTTCCAGACAGCGGCCACAGAGCTGCTGGACTGGTGCGGAGACCCACGAGCCTTCCAGCGGCCCTTCGAGCAAAGCCTTATGGGATGTTTGACGGTTGTAAGCCGTGTGGCAGCGCAGCAGGGTTTTGATCTGGACCTCGGCTACCGGCTTCTGGCCGTTTGTGCTGCAAACCGGGACAAGTTCACCCCAAAGTCGGCAGCTCTCCTATCGTCCTGGTGCGAGGAGCTGGGACGACTGCTTTTGTTGCGGCATCAGAAGAATCGTCAGAGCGATCCCCAGGGCAAAGTACCCTTGCAGCCACCCATGAACTCCATGAAGCCCTCGCTCTCACATGGTGATGGGTCCTTTCCATATGACAGCGTTCCCTGGCAACAAAACGCCAACCAGGCCCCAGGATCATTGTCAGTGGTTACAACGGTTTGGGGAGTTACTAATACGTCACAAAGTCAGGTATTGGGTAACCCCATGGCCAATACCAACAATCCCATGAACCCTGGAGGCAACGCACTAGGGTCGGGTATGTCAGCCAACAACCCAGGGATTAACTCACCTCAGTTCCCTGGCCAACAACAACAGTTTTCAACTAAAGGGGGATCCAACCAGGCCTACATGCAGCAAAGCATGTATGGGCGTCCAGGTCACCCGGGAG
>TCONS_00011977
GGAGAATAAGCTTCTCCTCATTGAGTTCTGTTACAAAGCCCCCCCTCCACTTGTGCTCGCCTTATTGGCCAGCCTGCTTGACTATTGCTTTCAGAAGTGCAGATCTATTACATCTTAGTGGACAAAAGATGATGAAGAGTCTGGATTAGGACGTGCTGTGGTGTGCGAGGAGGCCTTGAAGCACACTGAGCTCTTTGTCAGGAGGGTGGATCTGTCCCAGAATGCACAGCTGCGTTCGGACCAGGAGGCCTTGGGTTACCGGCTGGGTTTTTCGCAGGGTTGTGCAGATGCACCGAGTCAAAGGGCAGGAGCACTTGGTCGAGTGAAAACGATATCCACTTTAAGCTCAACGTATACCAGCTCTCGTCGAGTACAGCACTTACAGAATCCGGCCAATTTCCAGACAGCGGCCACAGAGCTGCTGGACTGGTGCGGAGACCCACGAGCCTTCCAGCGGCCCTTCGAGCAAAGCCTTATGGGATGTTTGACGGTTGTAAGCCGTGTGGCAGCGCAGCAGGGTTTTGATCTGGACCTCGGCTACCGGCTTCTGGCCGTTTGTGCTGCAAACCGGGACAAGTTCACCCCAAAGTCGGCAGAAACCACCACCTGCAGGAGATGTCAGAGTGACACAGCTCTCCTATCGTCCTGGTGCGAGGAGCTGGGACGACTGCTTTTGTTGCGGCATCAGAAGAATCGTCAGAGCGATCCCCAGGGCAAAGTACCCTTGCAGCCACCCATGAACTCCATGAAGCCCTCGCTCTCACATGGTGATGGGTCCTTTCCATATGACAGCGTTCCCTGGCAACAAAACGCCAACCAGGCCCCAGGATCATTGTCAGTGGTTACAACGGTTTGGGGAGTTACTAATACGTCACAAAGTCAGGTATTGGGTAACCCCATGGCCAATACCAACAATCCCATGAACCCTGGAGGCAACGCACTAGGGTCGGGTATGTCAGCCAACAACCCAGGGATTAACTCACCTCAGTTCCCTGGCCAACAACAACAGTTTTCAACTAAAGGGGGATCCAACCAGGCCTACATGCAGCAAAGCATGTATGGGCGTCCAGGTCACCCGGGAGGAGGCGGCTTTGCGGGAAGTTATCCTGGCGGGCCCAATGCACCGAGTGGTATGGGCATGCCCCCGCATACACGACCGCCTTCTGATTTTACCCAACCTGCTGCCGCCGCCGCCGCTGCTGCAGTCGCTGCCGCCGCCGCTACAGCAACAGCCACTGCTACAGCCACTGTGGCGGCTCTGCAAGAGACCAATAAAGACATGAACCAGTACAACCAGGTTTGCTCCTCATTCCAGATGGGGCCTACGCAAGGCTACAACAGCCAGTTTATGAACCAGCCAGGGCCTCGCGGACCCCCATCCATGGCAGGAGGCATGAACCCAGCTGCTATGGGTGGTGGAATGAATAGCTCCAACATGAGCGGCCCACCGATGGGTATGAACCAGCCCAGAGGCCCAGGCATGGGGCCCTTTGGTGGCCATGGCCAAAGGATGCCTCAACAGGGTTACCCTGGACCCAGACCTCAGTCCATGCCCATGCAGGGCACTAAAAGGCCCTATCCAGGAGAGCCTAACTATGGAGGCCAGCAGTTTGGACCCAATGGCCAGTTTCCCAACCAGCAAGGGCAGTACCCTAACCCAAACGCTTCAAGACCACTTCCTTCACCCAATTACCCTGGGCAGAGGATGCCAGGACAACAGAGCACTGGTCAATACCCCCCAACAGGGGTACCCATGGGCCAGTATTATAAGCAAGAGCCGTTTAATGGTCAGAACAACAATTTCTCTGGAGGTGGTTATGGCTATAGTCAAGGAAATGGGCCTCCTCGGCAGGTGGTGAACTACCCACACTCGCCCGTTCCTGGAAACCCCACACCGCCCATGACCCCAGGAAGTAGTATCCCTCCATACCTGTCACCCAGTCAGGACGTCAAGCCCCCGTTTCCTCCAGACATGAAGCCAAACATGACGTCTCTGCCTCCGCCTCCAAACAATCCCAATGAGGAGCTTCGACTGACTTTCCCCGTGAGGGATGGAGTGGTGCTGGAGCCTTTCAGATTAGAGCACAACCTGGCCGTCAGTAACCATGTCTTCCATCTGCGGCCCTCCGTCCACCAGACGCTCATGTGGAGATCTGATCTGGAGCTGCAGTTTAAATGCTATCATCACGAGGACCGACAAATGAACACCAACTGGCCCGCATCCGTCCAAGTCAGCGTGAACGCCACACCACTCACCATCGAGAGGGGCGACAATAAAACATCGCACAAACCCCTGCACCTAAAGCACGTTTGTCAACCTGGGAGAAACACCATCCAGATCACCGTCACAGCCTGTTGTTGTTCACACTTGTTCGTGCTTCAGCTGGTGCACAGGCCGTCGGTCAGATCAGTCCTGCAGGGGCTCCTGAAGAAGAGGCTTCTTCCCGCTGAACACTGCATTACTAAAATTAAAAGAAACTTCAGTAGTGTAGCAGCGTCCACTGGGAACGCCACGCTTAATGGAGAGGATGGAGTAGAGCAGACAGCCATCAAAGTGTCCCTCAAGTGTCCAATCACATTCCGACGGATCCAGCTTCCTGCCAGGGGACACGACTGTAAACATGTGCAGTGCTTTGACTTGGAGTCGTATCTGCAGCTGAACTGTGAGAGAGGAACGTGGCGATGTCCTGTATGCAATAAAACAGCGTTATTGGAAGGCCTGGAGGTGGATCAGTACATGTGGGGAATTCTCAATGCCATTCAAAATTCGGAGTTTGAAGAGGTCAACATCGATCCTACGTGTAGTTGGAGGCCGGTTCCCATAAAGTCGGACATTCATATAAAGGAGGACCCAGATGGCCCTCTGGCCAAACGTTTCAAAACCATGAGTCCCAGTCAAATGATCATGCCTAATGTGATGGATATGATCGCCCAGCTGGGTCCCGGCCCTTCGCCCTACACCCCACTCCCCCCACAGCATGGAGGAAACAATGGAGAATATGGGGGCCAAGGTAGAGGCAATAGTTACCAGGGCCATGGAAACTTTGACTTTCCCCACAGTAACTCTGGTGGCGGAGCTCCCATGAATGACTTCATGCACGGACCCCAGCTCTCACATCCACCAGACGTGCCCAACAGCCTCATGGGTCCCGACAAGCCCCTCGCCCATGGCATGCCTGATACGATGCCTCATCCTGTGAGCGCTGATCAATCCCATGCTTCCATGCAGCCAGGCATGCACGCGTCCCCCCACCCCAACAGCCAATCAGCTCAGCCATTGCATCACAGCGGCCCCCCATCATCCCAGCCCCCTCGCCAGCCCCCGTCCCAACAGCAGCCCAGCCAAAACACTCACCCGCATCCCGACATGAGCTTCAACCCCTCCGCCGATGGCCAGCCTGGTGGACAGGGGCCCGCAGACATGCCTGAGCCTTCTCTGGACCTTCTTCCAGAACTGGCGAACCCAGACGAGCTGCTGTCATACTTAGACCCTCCAGACCTTCCGAGCAGCAGCAACGACGATCTGCTTTCCCTCTTTGAGAACAACTGACTTCCTCTAGTCGGCCTTTTCCCACAGGCCCTTGGATAGTTTGGCTGTCAGGAACGGAGAGGCACCTGAAGACTGACTCTGTACTTTGCAAACAGGAAACAGCCATCCTTTTGCCTCTTCCTCGTGTAAATAATCTCACTCTTTTACAAGCAACCTTTTCCACGCTTATATGGCAGCCATGTTGGTTGGCACTAAAGTGATATCTTTCAATACTATTGGAAATACATGTGCAGCTATAATCAGTTCATACGAATGCGTCACACAGAACTGCGTGTGCGCTCACTAGGAAAGTATTGTAGCAtttttaattcagatttttttccttttgtgaAAAGAAGACCTGAATAGAAagcagatatataaatatataaatatatatatttcttcctGTACCGGCCTCTGTGTGTCCGCAATCTCTTGAAGGTCTGTTCTTCCAAGCTCTTACCACCACGGCTTCCCAAATCCTCGTCCGCTGGATGTCCACACTGTTCGTCTGTCCATCTCcatcatatacaaaaaaaaaaaacaaacaaaaaaaaagcacaagagAATGCGTCAAACTGCACCTAGAAGCTTGTAAAGGAGACAACAAAAGGGAAGAAAAGCTCACCTCTCGACCACAGGAACCATTTTAATCCTCCCATCCCAGAGACTAGCGATGGGAGTCCTGCGAAAAGTCGCTCACGCCGCAGGACGATGCGATTCATATGTCCAGCACTTTCAGACATATGTGTCATGTTTCCTTCTCGAGACAGGATCGCAAACGTTTCTGTATCCACAACATCTTCCGACAGATTGGACTCTCCACATTGGCGGTCGCAGTAAAAGAAGAAAGCAGTTGGCTTTTGGAAGGGTAGTCAGTCAGTTTTGTGTCATCTCGTCTTCTCTGTCATGCATGAGGCTTGGTCAATTTAGGCTCTCAGTGTACCGTTTGCACCCCACAAACTGCATATGATGTTAAAACACTCAGTTGCCAATCTCCTTTTATTTTAGTTCTCGTTTTAATTCAGCCTTTTATTCATGAACTGTCATGGTaacgttttattttataatgcacaatatattgttcatataattgtgttttctttgtacaaaatatgtacattttattcTCAAGATGTCCATAGATTACCAAAGTTATGCACCCTGATTTGAGAAGGTGGCCCAAAGCGGTTTTAAAGAGACCATTTCCCAATTGAATTAGATTGAAATGTGTAATTTGTCCCACTTTTATCATTTTGTTTACACGGTAATTCTACAGCAAACAATGAAGAAAGTGTTTTTAGGATGTCTTCTATACTGTATTTATAGATTGTactttttaattcatttacatGATTAAGCTATCTCAACAACACCCATTGATGCATCAATCAGTGCTCTGTGAGTCCTTTTATAACAGCAGATCAGTCGATTttcacaaaatgtttattttttctgtattttctttgctTTTAAATCAAAATGACCCTGGCAAATAGTTTCTCAGTATTTATGACATTATAATAATGACATTTCCATGATTTCTCAAAGACTATCGAAGAGCTACGATTGTTATCGATTATTAGTTTGGGATGCGTTTATCggttttaagttattttgtatGAATTGCAATATTACGtttctagtttgtttgttttcttctgtTCTTCTTGGTGTAGAATTATGTACAAAAGAAATGATGTTTGTCGTCGACAATTGAAACACTTGGAACTCCAGCAGGAAAATGTGGGTTCAAGTTCTATAGCGTTTGTCCTGTTGTTCACTTGTATATCCTTTTTCAAAGATGCACTGCCACATACTCGTTCCCACTTTGTAGACACAAATAGGCATAAACTGAACTTTAAACTGTGCTATCCATGTACAGTCGTTGAGGAGACAGTGGGCACCGAGGCAGGAACACAAAGCCTTGAACCAACTggactgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgtgtgtgagtTTGTTCAGGGTTCGGAGAGGGTCGAAGGAAAAGGGGGGAAGGGGCACATTAGGGATGCATGTACATATGTAAATGATAAATAGAGACACGTTAACAGAAATGTATTCATTTTCCCCAGGGGAATGTGCATTGTGTATTTAGAATTTGTAAAGCTTGCATCCTCCCATCAGAATCTAAATTGGGTAAAATGAATCTGTGTTTGTTAGTGTCTGTGGAACCTCGAAGCATTTGTTCACTTTTGTAAAATACTCATCCCACATTGACTGAGGAATTCGGGGAGGggagataaaagaaaaaaaaagacacatttgttttacatttgtgtAATATTTAGCTTATGTGTATTGCTCCATTTCTTGTGTACTTAATAAGGTGCTACAGAAGATGATGAAGAAAATCCTTTGGGGGGGAATTCAATTGGACAATAGGGACACAGGGGCCAGAAGCGGTTCCAAAAGATTGTAACCAAAATCCAGAGTTTGTACAATTTTGATATCACGATCaggaaaatgtaaaacaaaaacaatgaggtACAATCTTGAGGTGATTGGCACCAAACGTTGCAGTTGTCTTTGCTTGTACATTCTGTTGTACAATCATTTCATATTCTAAACTGgtcagaagaaagaaaaaaaacaaaaaactaattgtGATTTTTAGTCTTGCAAAACTGTATGTAGTTAGATGCTGTGACATCCTAATATTTATCTAATAAATATGTATTCAGATGAAACAA

Function

symbol description
zmiz1a Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in chromatin-mediated maintenance of transcription and regulation of transcription by RNA polymerase II. Orthologous to human ZMIZ1 (zinc finger MIZ-type containing 1).

GO:

id name namespace
GO:0048096 chromatin-mediated maintenance of transcription biological_process
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-27 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in chromatin-mediated maintenance of transcription and regulation of transcription by RNA polymerase II. Orthologous to human ZMIZ1 (zinc finger MIZ-type containing 1).

Ensembl:

ensembl_id ENSDARG00000074502

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011976 False 897 mRNA 0.54 8 30421472 30552592
TCONS_00011977 True 6259 mRNA 0.48 22 30506781 30570859

Neighbor

gene id symbol gene type direction distance location
XLOC_006063 AL929330.1 coding upstream 169615 30251741 ~ 30251857 (+)
XLOC_006062 qrfpra coding upstream 186252 30215765 ~ 30235220 (+)
XLOC_006061 pald1b coding upstream 207104 30169233 ~ 30214368 (+)
XLOC_006060 eif4ebp2 coding upstream 252575 30163515 ~ 30168897 (+)
XLOC_006059 spock2 coding upstream 289216 30054996 ~ 30132256 (+)
XLOC_006066 ppifa coding downstream 1313 30572172 ~ 30575799 (+)
XLOC_006067 NA coding downstream 105966 30676825 ~ 30677643 (+)
XLOC_006068 CR762483.1 coding downstream 121810 30692669 ~ 30695994 (+)
XLOC_006069 cxcl18a.1 coding downstream 125427 30696286 ~ 30699369 (+)
XLOC_006070 cxcl12a coding downstream 233508 30804367 ~ 30819715 (+)
XLOC_006056 NA non-coding upstream 529652 29889189 ~ 29891820 (+)
XLOC_006054 CT025909.2 non-coding upstream 666045 29755293 ~ 29755427 (+)
XLOC_006053 CT025909.1 non-coding upstream 830357 29590994 ~ 29591115 (+)
XLOC_006049 NA non-coding upstream 971751 29446817 ~ 29449721 (+)
XLOC_006071 CR762493.1 non-coding downstream 265797 30836656 ~ 30836776 (+)
XLOC_006074 NA non-coding downstream 349695 30920554 ~ 30928661 (+)
XLOC_006101 NA non-coding downstream 1235661 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 1384361 31955220 ~ 31978484 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09164233_09178383 ZMIZ1, ZMIZ1A coding CI01000012 null 9164101 ~ 9179268 (-)
bowfin (Amia calva) AMCG00002983 zmiz1,LOC103381918 coding CM030139.1 CM030139.1 8476692 ~ 8487793 (+)