AMCG00010933


Basic Information

Item Value
gene id AMCG00010933
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5079208 ~ 5080356 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010933
ATGGACAGTGGCGGTAGGGGTCGCTCCGTCAGTGCGGTGGAGCGGCTGGAGGCTGACAAGGCCAAGTATGTCAAAAGCCAACAGGTGATGAATACCAAACAAGAGCCTGTCCTTGTGCCCTGCACCACCCCGCCTCCTCAGCCCAGAAGACCCTTGACAGTCCCCTGCGCGTCCGTACCCCTGCCGCCCAGGAGGCCGCTCACTGTACCCTACTCCGCACCCCCAGCCCTGATGACGAGACCCTTCAACCTCAGACATGAAAAAGAAGACGCCTCCCAGGACCCCGAGGGCAAGAAGGAGAACCAGAAcgtggaagaggaggagagtaACCGTAACAACGCCAAGaacacccccaccacccctcctACCCCACCGAACAACCCCGTCCTGCGGAGGAGTGGCGGGAGCGGCAAGCGGATGCTAAGGCCGGACTCTCTGGTCATCTACCGGCAGAAGCGGGAGTGCAAGACCTCAGGGGGCAGCGAGACCAAAGGGTACAGCTTTGTCAGGAGGCTGTTCCAGGGCTCCATGCGAGAGAAAACTGGAGGGATGGAGATCCCGCCGAAAATGATCATCAATGAGGAGAAGACCCCCCCCAAAGAGGAGGAGTCGCGCATGTCATGGgccaatgagagagagataccCAATGCGGAAAGGGAAGAGCGCGTACCTAAAGGCTTGCccgagacagagggagaggctTTTGTGGTTCCCAAAAGCCCTCAGACTCTGGAGAGGACTAGGAGAAATGGAACTGTGCTGGTGGAGACTGGACAACCTGCCATTTTGAGACACAAGGGCCTTCAACGGTCCAAATCAGACCTCTGGTTACGGTACTCGCTGGCCTTGTCTGAGAAAGAAAGGTTCTTCAACTACTGCGGGCTGGACCTGGAGATGGTTGACCGTCTCGGGCTGGAGAACTTCTTCACGACCAGCTCGGACACGGTGTCTGTGATTCTGCGCAGCGTCAGCGCGGGGGGGTCCGAAGCCAGTGAATTCTCGCGGCACTCGGGTGAGGGGCTCTTTGAGGAGGAGCTGACTGAGCAGGTGCCCTCGGTCGTGTCCGTGATTGAGAGGAACGCAAGGGTCATCAAATGGCTGTACGGCTGCAAGAACGCCAAGGACACCCCTAAAGAATCGACTGTATAG

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010933 True 1149 mRNA 0.58 1 5079208 5080356

Neighbor

gene id symbol gene type direction distance location
AMCG00010918 NA coding upstream 506665 4570100 ~ 4572543 (+)
AMCG00010916 NA coding upstream 829160 4239933 ~ 4250048 (+)
AMCG00010915 fhl3,LOC107587754,LOC107716861,LOC107704953 coding upstream 850280 4220702 ~ 4228928 (+)
AMCG00010912 meaf6,LOC106589015 coding upstream 903208 4171483 ~ 4176000 (+)
AMCG00010911 snip1,LOC107700737,LOC107755266,LOC107597115 coding upstream 908200 4167178 ~ 4171008 (+)
AMCG00010941 NA coding downstream 71480 5151836 ~ 5156195 (+)
AMCG00010936 NA coding downstream 79654 5160010 ~ 5160444 (+)
AMCG00010935 NA coding downstream 86238 5166594 ~ 5169607 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding downstream 174739 5255095 ~ 5274132 (+)
AMCG00010942 NA coding downstream 203460 5283816 ~ 5284298 (+)
G103152 NA non-coding upstream 459552 4536337 ~ 4619656 (+)
G103150 NA non-coding upstream 641072 4437877 ~ 4438136 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding upstream 788528 4288023 ~ 4290680 (+)
G103035 NA non-coding upstream 1485801 3592668 ~ 3593407 (+)
G102959 NA non-coding upstream 1616705 3459862 ~ 3462503 (+)
G103258 NA non-coding downstream 53871 5134227 ~ 5140721 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding downstream 273413 5353769 ~ 5355664 (+)
G103333 NA non-coding downstream 376002 5456358 ~ 5460573 (+)
G103348 NA non-coding downstream 469702 5550058 ~ 5613434 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding downstream 536702 5617058 ~ 5652821 (+)
AMCG00010922 NA other upstream 436805 4634472 ~ 4642403 (+)
G103078 NA other upstream 995622 4049938 ~ 4083586 (+)
G103030 NA other upstream 1498931 3577235 ~ 3580277 (+)
G102947 NA other upstream 1635674 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 1650779 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 1306680 6387036 ~ 6395484 (+)
G103542 NA other downstream 1561627 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 1812041 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1991077 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 3468007 8548363 ~ 8552605 (+)

Expression


Co-expression Network