AMCG00010939


Basic Information

Item Value
gene id AMCG00010939
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5134053 ~ 5140509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010939
AATGTCTGCGCCCGACATGCAGAAATCTGGTTCAATCCGGTTTCCATcttatatttctatataaaaaCTTTATAAAAGATACAgccattatattacatttaccATTGGTTAACGGTATTCAGTGTACAACGGTGGACATCCTTCCCAGTTTCTCctagttttgttacattttcaaacgGTAAAATGCCCAAAAGAAAGTTGCACTTCTTAGCGCGCGCGGCGACTCGCTCGGCATCCCCGGGGCTCGCGGCGCTCCGGCCGGATAAAGCGGCTGCGTTTCCACACGAATCGCGATTAATCCGCATCCAGGCGCCTTTTCCACCCACCCGCGGCTCCTGCGCGCCGCCGTGCacagACCCTGCAGATAAGGCAGCTCGGTCTAAGGAAGAGAAGGTGGCTAAGGGTGGCAAGAAAGGCAAAGGCGACGCTGGAAACAACCCTGCTGAAAATGGCGATGCTAAGACCGACCAgGCACAGAAGACCGAGTCTGCTGCCGACGCCAAGTAAACTGCGTTTGAACTTTTGATAATTCTATGTACTCGGTGACTGTACAGTTTGAAATAACTATTTTTTATcaagttttatataaaaaatgcagttgTTAGAGTTCCATTGTTagcttaaattgtattgtattgaaagtGTGTGCAAAAGGGGTTGTCATTAgcttaaaacttttttttatgccATTGTTAGAAAAACTCCGTCCGTACAATGTTGAAATAAGATGTTGCCCTTTgtaataaattttaaaaaactgCTGAATGttacgattttttttttctcctacattttggtttttaaatttCCGTTTTAAATACCAAACCTTATCATAAGGCAGCTaacttatattttttaaaatagtagAATTTGCGGGAtggcctttttttcccccaccagATCATTTTTAAGATAAATTTATATGATTTCAATCGAGTAGATATTGATATGTAGCCTAAATCTCAACTGCAGATCCGAATATAATGAAGGTGTGCCAGTCTAGTCAGCAATGTTGAAAAAAGGAAACGAGAAAACCCTGGAGTTCAGTCGAAAATGTGAACTGACCGTCCTTTTAAactgatgaaaatgttttttttttttattatttttgtgaaaaatataattgggAAGCATTTAGACtgcttgcattaaaaaaaaaaaaaattgccgttctttacattatttgcattaataataataaaaaaaaaatcacaaaagctTCTGTTTTCCTTGGTCATTTAcgatctgtgtttgtttttgtgaaatggCATAAAAAAATGggatcttttttaatttttttgtggtGTTCTACGCATTAAGTTCAGGAATACCATGTTAGTTCCTGTATTAATCTTTCTGTGGCCGTCATGAAAGCCGTGCATTAGAACGTGATGCACTTGTCTTAACCTTATGCTATAGGgcgaatgcatttttttgtctAGAGGTAAATGCACTGTCATTTTTGAAGGATGAGATTGATGCCATACAAGAAtgttaatctgaaatgtgtatttgtataagTGGTCACGATATTAAAAAGTTGTTCCCAAGATGAGTTGGCAGTGACCTGTACACACTACTGTTAATCATAACAGTGCTTTTTATGAACTAGTTAactacatatactgtatattcccGATAAAATACAAGAATACAATTCTAATTGTGTTGCCAGTTGGAATAAATTAATTGCAATAAAGTTAGCGCACTGCCAGTTTACCTTGGGAGAATTGCGATTGGATTATAGTAGTGTCTTCCTGTGTCCATACTAACAAGtaagtgtttttctctttgtatCAACCAACCTTTAGCAGTGAGTAAGACTTAAGCATGCAGCATAATTTGCACCAGATTCCTCGAACAGACTGTTCTTTTTTCGTTCTCGATGTACCGATAATTAATTGCCTATTTAATTAACTTGTTTTGGAATATAATTAAAGGGGGAATAAAAATTAGTCAGTTTAATATATGGCACTAGTGTGGATGAGGTCTGGTTAGGGGAAAAACACAGTAGCATCCTTTTTATATATCCTGCACTGCTCTTGGAGAAAGTCAATTTTACAGGGTCGGCAGAAGTTATTGATTTGACAAGAGTCAAGACTAAGTGTAATTGAAACTCCcaagaatttgttttttgttttcagaccctcgttaaagaaaaagcacattttcaattACAGGTACCTTACAAGTGCCTTAACTTGGAAAGGCCTTCGGAAACATGGATATTTTAGCAGTTTCATTTTTGGTTCTGTCAGGCATTTAATGTGAAATGGTTTACCATATTGTTTTCAATGGTCAATATAATAAAGTTATATTTTGAACACAGACGTTTCACACTTGTCTTGTGCGATTAGGAGTGTTTCTAAAGCGTCTTTAAAGGTGGAATGAGCAGAAGTATTGAGGGAAGTAGCATCTGTAACAGGGTGGGTCACATCTAGAAATcaacactgtttttgtttgcttattaaAGGGAATTGGCG
>TU128994
tttctatataaaaaCTTTATAAAAGATACAgccattatattacatttaccATTGGTTAACGGTATTCAGTGTACAACGGTGGACATCCTTCCCAGTTTCTCctagttttgttacattttcaaacgGTAAAATGCCCAAAAGAAAGacagACCCTGCAGATAAGGCAGCTCGGTCTAAGGAAGAGCCAAGACGTTCAGCAAGGTTGTTGGCTAAACCAGCCCCTGCCAAAGCGGAGCCCAAACCCAAAAAGCCTGCACCCAAGAAGGTGGCTAAGGGTGGCAAGAAAGGCAAAGGCGACGCTGGAAACAACCCTGCTGAAAATGGCGATGCTAAGACCGACCAgGCACAGAAGACCGAGTCTGCTGCCGACGCCAAGTAAACTGCGTTTGAACTTTTGATAATTCTATGTACTCGGTGACTGTACAGTTAGAGTTCCATTGTTagcttaaattgtattgtattgaaagtGTGTGCAAAAGGGGTTGTCATTAgcttaaaacttttttttatgccATTGTTAGAAAAACTCCGTCCGTACAATGTTGAAATAAGATGTTGCCCTTTgtaataaattttaaaaaactgCTGAATGttacgattttttttttctcctacattttggtttttaaatttCCGTTTTAAATACCAAACCTTATCATAAGGCAGCTaacttatattttttaaaatagtagAATTTGCGGGAtggcctttttttcccccaccagATCATTTTTAAGATAAATTTATATGATTTCAATCGAGTAGATATTGATATGTAGCCTAAATCTCAACTGCAGATCCGAATATAATGAAGGTGTGCCAGTCTAGTCAGCAATGTTGAAAAAAGGAAACGAGAAAACCCTGGAGTTCAGTCGAAAATGTGAACTGACCGTCCTTTTAAactgatgaaaatgttttttttttttattatttttgtgaaaaatataattgggAAGCATTTAGACtgcttgcattaaaaaaaaaaaaaattgccgttctttacattatttgcattaataataataaaaaaaaaatcacaaaagctTCTGTTTTCCTTGGTCATTTAcgatctgtgtttgtttttgtgaaatggCATAAAAAAATGggatcttttttaatttttttgtggtGTTCTACGCATTAAGTTCAGGAATACCATGTTAGTTCCTGTATTAATCTTTCTGTGGCCGTCATGAAAGCCGTGCATTAGAACGTGATGCACTTGTCTTAACCTTATGCTATAGGgcgaatgcatttttttgtctAGAGGTAAATGCACTGTCATTTTTGAAGGATGAGATTGATGCCATACAAGAAtgttaatctgaaatgtgtatttgtataagTGGTCACGATATTAAAAAGTTGTTCCCAAGATGAGTTGGCAGTGACCTGTACACACTACTGTTAATCATAACAGTGCTTTTTATGAACTAGTTAactacatatactgtatattcccGATAAAATACAAGAATACAATTCTAATTGTGTTGCCAGTTGGAATAAATTAATTGCAATAAAGTTAGCGCACTGCCAGTTTACCTTGGGAGAATTGCGATTGGATTATAGTAGTGTCTTCCTGTGTCCATACTAACAAGtaagtgtttttctctttgtatCAACCAACCTTTAGCAGTGAGTAAGACTTAAGCATGCAGCATAATTTGCACCAGATTCCTCGAACAGACTGTTCTTTTTTCGTTCTCGATGTACCGATAATTAATTGCCTATTTAATTAACTTGTTTTGGAATATAATTAAAGGGGGAATAAAAATTAGTCAGTTTAATATATGGCACTAGTGTGGATGAGGTCTGGTTAGGGGAAAAACACAGTAGCATCCTTTTTATATATCCTGCACTGCTCTTGGAGAAAGTCAATTTTACAGGGTCGGCAGAAGTTATTGATTTGACAAGAGTCAAGACTAAGTGTAATTGAAACTCCcaagaatttgttttttgttttcagaccctcgttaaagaaaaagcacattttcaattACAGGTACCTTACAAGTGCCTTAACTTGGAAAGGCCTTCGGAAACATGGATATTTTAGCAGTTTCATTTTTGGTTCTGTCAGGCATTTAATGTGAAATGGTTTACCATATTGTTTTCAATGGTCAATATAATAAAGTTATATTTTGAACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010939 True 2483 mRNA 0.37 5 5134053 5140509
TU128994 False 2151 TUCP 0.35 7 5134210 5140456

Neighbor

gene id symbol gene type direction distance location
AMCG00010940 NA coding downstream 30656 5096591 ~ 5103397 (-)
AMCG00010934 LOC106605147,LOC101067841 coding downstream 103523 5002886 ~ 5030530 (-)
AMCG00010931 NA coding downstream 152600 4978936 ~ 4981453 (-)
AMCG00010932 NA coding downstream 236496 4894919 ~ 4897557 (-)
AMCG00010930 man1c1,LOC101464129,LOC100705345,LOC105006133 coding downstream 294994 4816733 ~ 4839059 (-)
AMCG00010938 dhdds,LOC107564097,LOC104959484,LOC104959477 coding upstream 715 5141224 ~ 5149261 (-)
AMCG00010944 NA coding upstream 35390 5175899 ~ 5203631 (-)
AMCG00010947 NA coding upstream 195337 5335846 ~ 5347367 (-)
AMCG00010945 id3 coding upstream 213434 5353943 ~ 5355562 (-)
AMCG00010948 NA coding upstream 233350 5373859 ~ 5383129 (-)
G103149 NA non-coding downstream 708481 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 981305 4152518 ~ 4152748 (-)
G103094 NA non-coding downstream 983136 4150499 ~ 4150917 (-)
G103087 NA non-coding downstream 994416 4138620 ~ 4139637 (-)
G103050 LOC103376870 non-coding downstream 1349422 3784257 ~ 3784631 (-)
G103309 NA non-coding upstream 191223 5331732 ~ 5334257 (-)
G103329 NA non-coding upstream 219466 5359975 ~ 5378226 (-)
G103362 NA non-coding upstream 418168 5558677 ~ 5615853 (-)
G103473 NA non-coding upstream 1243972 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 1373354 6513863 ~ 6514123 (-)
AMCG00010937 NA other downstream 4912 5115715 ~ 5129141 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other downstream 483647 4642652 ~ 4650406 (-)
G103112 NA other downstream 948079 4169793 ~ 4185974 (-)
AMCG00010901 NA other downstream 1559238 3553986 ~ 3574815 (-)
G102990 NA other downstream 1714877 3320813 ~ 3419176 (-)
AMCG00010946 NA other upstream 143821 5284330 ~ 5325424 (-)
G103395 NA other upstream 564261 5704770 ~ 5748564 (-)
AMCG00010966 NA other upstream 824624 5965133 ~ 5974307 (-)
AMCG00010988 NA other upstream 1488061 6628570 ~ 6644723 (-)
G103832 NA other upstream 2797628 7938137 ~ 8027031 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010292 hmgn2 coding NC_007127.7 CM002900.2 51180938 ~ 51184126 (+)
grasscarp (Ctenopharyngodon idella) G298372 NA unknown CI01000086 null 1162774 ~ 1164582 (+)