AMCG00010951



Basic Information


Item Value
gene id AMCG00010951
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5504377 ~ 5511682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00010951
gagggaggcaaagagagagagtgacaaaGAGAAACTACTCGGGAGTCCTTTTCTGTAACTTTTCCTTTGGTTTCTTCTTTAAGGATGAAGTTGCTTGTGGTTGCCGCTGCCTGGGTGGCTGTTGTCAGCGCAGCCAGTTTAACCCTTGAAGACCTGGAGTTTCACGCATGGAAACTTAAGTATGggaAGATGTACAGCTCGCCTGCTGAGGAGGCCCAGCGCAAACAGACCTGGATGTCAAATCGTAAGCTGGTCATCGTGCACAACATGCTGGCAGAACAGGGAATCAAGTCGTACACACTGGGCATGACCTTCTTCGCTGACATGGACAACGAGGAGTACCGGCGTGTGGCGTTCAGGGGCTGCCTGGGCCGCTTCAACAGCACCAAGGCCCCTCGAGGATCCACCTTCCTGCGGCGGGCAGTGGGTGCCAGTCTTCCCAGCACCGTGGACTGGAGGGACAAGGGATACGTCACTGAGGTCAAGGACCAGAAAAACTGCGGCTCCTGCTGGGCCTTCAGTGCGCAGCTGGTGGACTGCTCAGGTAGCTTCGGAAATTTCGGCTGTGGTGGAGGGTTGATGGACCAGGCCTTCGCTTACATTAAGGAGGCCGGAGGGATCGACACGGAGGAGTCTTACCCCTACGAGGCCACAGATGGGGAATGCCGATTCAATCCCAACACCATCGGAGCCACCTGCTCTGGCTACGTTGACATCGCCAGTGGAAAGGAGGACTCCCTGCAGGAGGCCGTGGCTAGCGAAGGGCCTATTTCTGTGGCCATCGATGCTGGGCATTCCTCCTTCCAGCTCTACCAGTCAGGTATCTACAATGAGCCCACCTGCAGCAGCTCTGAGCTGGACCACGGCGTGCTGGCTGTGGGCTATGGCACTGAGAATGGCAGGGACTACTGGCTGGTGAAGAACAGCTGGGGTGAGTCTTGGGGAGACAAAGGCTACATCAAGATGTCCAGAAACCAAAACAACCAGTGTGGGATCGCCACAGCTTCCAGCTACCCTCTGGTCTAAAGGACAGTCTGTTTCCTTGAACGTACACAGGTCTGGACTGACTATACTGTGAACAAGTCAGAGGCGTACCAAAGAGGAAATGATACACAATAAATCTCAAACCAATGATAATAATGTGCAATAATACCTCATTAATTAAGTTTATTAGCTGGCCGGTCATCTTTAAGGTTTTGAACTTAACCTTcacttttaaagaaataaaaacaacaactgtgcaTGTCATTAGAAAATCTGGTCATGGACTTTAGTTCTGTGCGTTAGGCGCTTTTCTATATTCGGATGTAACTCTAAACAAATGAAGACTTGTAGCTGAAGTACGGGCTGAATGTGCTCCTCTCTCAGGAAATACTGATGGTTAACAGCATCATTTgccacacagagaaaaacacagcCCTACTTCCCTTGAAGTGGTTGACTACGCAGGCATCTCTACACAGCAACACAGGGAAcagttaattttgtattgctgtttttcttacagacattttaaatgagatGTAACTTAAACGGTATTTACATTGAAGTAATTTGAATGTGCTTCTGAATATCTGCCAGATGTAAACAGTGTGTCTGAATTGAACTGTGGGAAAAAAGGCCTGGGAAAAGTTTCCCAGTTTCAAGTACTATTATGGCACCTCTGTGCCATAATACCCACAAAGACACTAAAAAGGAGATGTAAGGAGATGTAAAAGAGATGTATATGCTTTATTAGAGGTACAGACTAAAGTTGTAAAACACAGTGgtacattgttttttctgtgaacTGCCATCCGTCCCGTCTTATTTGCCTCACAGTTTGCATTTGTCTTGTTGCACTTTAATTTCTATTTCACTGTAAATCAGCCACAACTGTGAATGTAGATTCTCATCTGTCTGTCAGACTGactgtaattgttgttgttaatatacatatcaaaataaaatatactccACTGAGG

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01366 CTSH; cathepsin H

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00010951 True 1964 mRNA 0.47 8 5504377 5511682

Neighbor


gene id symbol gene type direction distance location
AMCG00010942 NA coding upstream 220079 5283816 ~ 5284298 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding upstream 230245 5255095 ~ 5274132 (+)
AMCG00010935 NA coding upstream 334770 5166594 ~ 5169607 (+)
AMCG00010936 NA coding upstream 343933 5160010 ~ 5160444 (+)
AMCG00010941 NA coding upstream 348182 5151836 ~ 5156195 (+)
AMCG00010956 NA coding downstream 82251 5593933 ~ 5599868 (+)
AMCG00010957 NA coding downstream 88237 5599919 ~ 5601213 (+)
AMCG00010962 NA coding downstream 422416 5934098 ~ 5939360 (+)
AMCG00010963 NA coding downstream 438744 5950426 ~ 5959972 (+)
AMCG00010967 NA coding downstream 465398 5977080 ~ 5977815 (+)
G103333 NA non-coding upstream 43804 5456358 ~ 5460573 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding upstream 148713 5353769 ~ 5355664 (+)
G103258 NA non-coding upstream 363656 5134227 ~ 5140721 (+)
G103152 NA non-coding upstream 884721 4536337 ~ 4619656 (+)
G103150 NA non-coding upstream 1066241 4437877 ~ 4438136 (+)
G103348 NA non-coding downstream 38376 5550058 ~ 5613434 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding downstream 105376 5617058 ~ 5652821 (+)
G103360 LOC101158568,LOC103376478,LOC107695181,LOC102780806 non-coding downstream 157443 5669125 ~ 5694122 (+)
G103413 NA non-coding downstream 451407 5963089 ~ 5965939 (+)
G103416 NA non-coding downstream 455835 5967517 ~ 5990587 (+)
AMCG00010922 NA other upstream 861974 4634472 ~ 4642403 (+)
G103078 NA other upstream 1420791 4049938 ~ 4083586 (+)
G103030 NA other upstream 1924100 3577235 ~ 3580277 (+)
G102947 NA other upstream 2060843 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 2075948 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 875354 6387036 ~ 6395484 (+)
G103542 NA other downstream 1130301 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 1380715 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1559751 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 3036681 8548363 ~ 8552605 (+)

Expression



Co-expression Network