AMCG00010962


Basic Information

Item Value
gene id AMCG00010962
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5934098 ~ 5939360 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010962
GAAATACTTTCGAACATGTCTGTGCTGGCCACGCCCAATGAGCTCTTTGTGTTTGAGGGACAGACCATCACCCTGAGCTGCCAGTCACAGACCAGTAGGCTGAACCTGACCTGGAGCTGGTACAGACAGAGCCCAAGTGGAGCTAGCATGGTGGGCTCTGGCAGGGAGCTGAGACTGGACAGAGTGGAAGATAGCGGCGTGTACTACTGCCAGGCTAACAGCACGGTGATGACCATAACTCAGATTAAACAGAGTCCAAACTATGAGGCCCACATCGTCTCCACGCCAGgtgatAAACTGGACTTCACAATTACTCTGAACAAGAACAAAAATTTGGAGATGTCCGGGGACATTTATGAGAACTATGAAGTGTCTGGAAACAACTACACTGACTTGACCCTGCCGAGAGCGCAAGATGAAGACATGTATGACACTCTGTCTTGAGGAGATAcagcaaacactgaaaaaactGCCTAGAACTACAGGCGATGGAATGCAGCTTGTGTGTATCATGCGGCACCGCTGTTTTACACTAGCTGTCTTGTGTAAAGAGCTGCAGGAGCTTCTGGgactttatttttacttatttattttagcgCAAAAGTTGTCTGAATGTTTCAGTGATTTCGTCAGTCAGGTACCACCTCAGAGGAttgttggtggtggtgatggtttTTATTGCTGACTTTTTCATCTACAAATTGGTTTGCAAACATGAATTCAATAGTGACTAAATGTCATACGTTCATTAGCTGCAGCAGCTGAATCAGTCAACTACATATTTTGGTGCATTgccttttgtttctctctgtctctccctcacaATCACATTTCCTCCCTTACCTCTCCAGTCGGAAACTCTCGGTCTCTGCCAACTGGCTTTATACCATAACAGATGCATAGGTATGTAGTAagcattttttgtaattattattattacattcacTCTCTTCTTTTAAAACCATTCTAGTGTGCTTTTGGCCTTGAATTTGTGGGTATTGTACAGCTGAAATTAGATTTTTCAACACAGTTTTAGATTCTTCTCTGACTGGTCTTTTTACTGTCCATTGTTCACTCCAtgctgacaagcttcccagtcccccataacatgatgctctCACCCCTACCCTTCACAGCTGGGATGGTGCTGACTGgttgatgtgctgtgttgggcttGGGCcagatgtaatgctttgaatttgTCTTATCTGACAACAAAACCTTCTGTCACATGTCTGCAGTGACACTTACATGCTTTGTCGCAAACCCCATACGAGATTTTAGATGGGTCTTTTCAGTAATGGCTGCATTCTTGCCACTCACTCACACAAGCCATCTTTGTATAAAGACTGtgatattattaatgtatgaaCACTGACTCCCATTTCAGACATATATAGGACTTTGCaaatctttcaaagtcactgttTGGCTTCTCAGTGGCTTCCCTAACCAGTTGCCTAATTGCCTGGCTGCTAAGATTAAAAGGGGAACCTAATTTGAGTAGAGACAGGGTGGGTTGAACAACTTCTTAATGATGGTTTTCAGTGTAATTGGTGACTTTGATGCCTTCTTGTAACATTCTCTTGATCactctttaatattttttctctgacTTTAGAAAACTCCTTAGTCTTCATGGTTAGTTGTATCACCACGAGTTGTGGTTTGAAATTCAGAATTTAACTGAAggacacatacagaaacaaattattatcAAGATTATCCACTTTGATTACACAAAGACAGAGGGCATAATTCTAATTCTGTAAATGTTCATATGAATCTGAACTGACTGAGACTCGCTTTAGCCGAGAggctgaatacttatgcaattgaGAATCTCAAAATTGTCTTTGAAAATCTAACTGATTGGCATAAtatcatcttttcttttttgctttatCAGTTTGGAGTAGATTGTGTAGATTCTAAATTTAAAGTCCTATTTGGAAGTTGAATtattttgcaaggcactgtatctATTTAACTGCTACCACTTTTCAAAGGATCATGTATTCAAAAACgaagtgcaaacaaaactgtATATAGGTCAATTATGAAGACAttggaagttttatttttggttgggggaaaaataataataaataaaaaagtaatgataTCAGTCTTTGATTTGCCATTCATTCATGGTGCAATCTTTCTGAGTCATTATTAAGACGGGTTTAACTTTGTATTccattaaagcaattaaatacCAGCTTAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010962 True 2230 mRNA 0.40 3 5934098 5939360

Neighbor

gene id symbol gene type direction distance location
AMCG00010957 NA coding upstream 332885 5599919 ~ 5601213 (+)
AMCG00010956 NA coding upstream 334230 5593933 ~ 5599868 (+)
AMCG00010951 NA coding upstream 422416 5504377 ~ 5511682 (+)
AMCG00010942 NA coding upstream 649800 5283816 ~ 5284298 (+)
AMCG00010943 rps6ka1,LOC107654838,LOC107721568,LOC107711701,LOC107697698 coding upstream 659966 5255095 ~ 5274132 (+)
AMCG00010963 NA coding downstream 11066 5950426 ~ 5959972 (+)
AMCG00010967 NA coding downstream 37720 5977080 ~ 5977815 (+)
AMCG00010964 NA coding downstream 38490 5977850 ~ 5987680 (+)
AMCG00010969 kdm1a coding downstream 96131 6035491 ~ 6051667 (+)
AMCG00010974 NA coding downstream 469558 6408918 ~ 6411796 (+)
G103360 LOC101158568,LOC103376478,LOC107695181,LOC102780806 non-coding upstream 239976 5669125 ~ 5694122 (+)
G103354 qki,LOC106922399,LOC103458862,LOC103144233,LOC107094928,LOC101469882,LOC107721620,LOC106947196,LOC107590898,LOC107697705 non-coding upstream 281277 5617058 ~ 5652821 (+)
G103348 NA non-coding upstream 320664 5550058 ~ 5613434 (+)
G103333 NA non-coding upstream 473525 5456358 ~ 5460573 (+)
G103316 id3,LOC102304963,LOC106610662,LOC101474249,LOC100706678 non-coding upstream 578434 5353769 ~ 5355664 (+)
G103413 NA non-coding downstream 23729 5963089 ~ 5965939 (+)
G103416 NA non-coding downstream 28157 5967517 ~ 5990587 (+)
G103431 NA non-coding downstream 87600 6026960 ~ 6029057 (+)
G103459 NA non-coding downstream 213633 6152993 ~ 6153266 (+)
G103463 NA non-coding downstream 315864 6255224 ~ 6255538 (+)
AMCG00010922 NA other upstream 1291695 4634472 ~ 4642403 (+)
G103078 NA other upstream 1850512 4049938 ~ 4083586 (+)
G103030 NA other upstream 2353821 3577235 ~ 3580277 (+)
G102947 NA other upstream 2490564 3436618 ~ 3443534 (+)
AMCG00010888 NA other upstream 2505669 3421082 ~ 3428429 (+)
AMCG00010979 NA other downstream 447676 6387036 ~ 6395484 (+)
G103542 NA other downstream 702623 6641983 ~ 6642628 (+)
AMCG00010990 pum1 other downstream 953037 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 1132073 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 2609003 8548363 ~ 8552605 (+)

Expression


Co-expression Network