AMCG00010966


Basic Information

Item Value
gene id AMCG00010966
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5965133 ~ 5974307 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010966
TCAGCAGCTGTTGATGGTGATGGTGGGAGGGGACAGCAGCGCTGGAGCTCATTGTGCGCCGGCGGAGCGCAGAGACGGTGCGCCACTGATGGGACAGAGGATGCCAaacCAGACCTTTACTCAAGAGACATGACTTGCAATACCTCCAACGGGATAAATTTGACCAGTCTGGTGGACTCCCAATTCAGGTACATCCTCTTCCCAGTAGTTTACAGCCTGGTCTTTGTTGTGGGGCTGATTGCCAACTGCTATGTCCTCTGGGTCTTCAAGCAGATGTTTAAAAGCGAAGGCGAAGGGAACTGGTTATTCTCGGGCTTCCTGTGCAGCATTTCGGGCTCCTTGTTCTTCATCAATGGATACTGCTCGGTCTTATTCCTGGGAGTCATCAGCTTCAACCGCTGCAGGGCCGTGACGAAGCCATTGGAGACTGTCAGGTCTACCCAGATCAAACGAGGCATAGTGGTGTCAGCCACCATCTGGGTCTTAATCCTGGCGTCTGCATTCTCTTCTCTTTTCGATGACCACCTCAACAGTGATGGCGAGTTATGCCGCTGTTTTGAGGGCTACCACTACCAAGATGAGTCAGCAAAGAAAAAAGTGGCCGTCCTCAATTTTGCGATAATCGGCATGTTCTTCTGCGTTTTCCTCCTGGTGGTGGTCTGCAACCTCCTCATCATCCGCACTCTGCTCTCCCAGACGGTGAAACAGCAGGGAAACCGAAAGAGAGGGGTCAAACAGAGAGCCTTGTGGATGGTGTGCGCGGTGCTGGTGGTATTTGTCGTCTGCTTCATCCCCCACCACATCGTCCAGGGGCCCTGGACACTGGCCGTCCTGTGGGGCAATGATAAGGCCCTAAATGATGCACACCAGATCACTCTGTGTCTGATGGGCCTCAACTGCATCCTAGACCCCATTGTCTACTGCTTTGCCACCAGGAAATTCCAAATCCACTTCTTGTCCCGGCTGAAGATATTTAATGGCAGCCGCAAGTGCTCCAGGTACACGTCAGAAACAGGTGTTTCCATAGAATACAAACCCAACGGCCAGCTGATGGAACAACTCAAGCCACCCCAGGAA
>TU129231
cttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatGCTAATATAGAGACCTTTGTAACTTGGCATTCCCTGAGACTGAAACAGGAACTGTTTGATGAGGTGTGCCTTGTTTATCTATGAGTTCAGCAGCTGTTGATGGTGATGGTGGGAGGGGACAGCAGCGCTGGAGCTCATTGTGCGCCGGCGGAGCGCAGAGACGGTGCGCCACTGATGGGACAGAGGATGCCAtgACTAAGTGATTGAGAAAATTTCCTTTTTGACAAATCTCTTCTCAACATCTGCCCGTGTGGATTCTCTTTGCTTCATGATTTCCTGTCTTAGTCTGAACTGAAGGCAGCTTTTTCCTGGAATTCCTGCAGTGGAGGATCGTGCTGGGACTTGAGTGGCCTGGGaacCAGACCTTTACTCAAGAGACATGACTTGCAATACCTCCAACGGGATAAATTTGACCAGTCTGGTGGACTCCCAATTCAGGTACATCCTCTTCCCAGTAGTTTACAGCCTGGTCTTTGTTGTGGGGCTGATTGCCAACTGCTATGTCCTCTGGGTCTTCAAGCAGATGTTTAAAAGCGAAGGCGTGAACGAAATCAAGATTTACATGATC

Function

GO: NA

KEGG:

id description
K04279 PTAFR; platelet-activating factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010966 True 1077 mRNA 0.53 3 5965133 5968966
TU129231 False 633 lncRNA 0.47 6 5966939 5974307

Neighbor

gene id symbol gene type direction distance location
AMCG00010965 pacrg,LOC107697704,LOC107583491,LOC107695182 coding downstream 40355 5905146 ~ 5924778 (-)
AMCG00010959 NA coding downstream 196859 5748383 ~ 5768274 (-)
AMCG00010961 NA coding downstream 247915 5705767 ~ 5717218 (-)
AMCG00010960 NA coding downstream 271348 5693444 ~ 5693785 (-)
AMCG00010958 NA coding downstream 291456 5655019 ~ 5673677 (-)
AMCG00010968 NA coding upstream 3615 5977922 ~ 5989279 (-)
AMCG00010971 dnajc8 coding upstream 29656 6003963 ~ 6014817 (-)
AMCG00010972 NA coding upstream 54573 6028880 ~ 6032424 (-)
AMCG00010970 NA coding upstream 100304 6074611 ~ 6077628 (-)
AMCG00010973 htr1d coding upstream 198501 6172808 ~ 6173935 (-)
G103362 NA non-coding downstream 349280 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 586907 5359975 ~ 5378226 (-)
G103309 NA non-coding downstream 630876 5331732 ~ 5334257 (-)
G103149 NA non-coding downstream 1539561 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 1812385 4152518 ~ 4152748 (-)
G103473 NA non-coding upstream 410174 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 539556 6513863 ~ 6514123 (-)
G103539 NA non-coding upstream 649774 6624081 ~ 6627452 (-)
G103556 NA non-coding upstream 780986 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 1141677 7115984 ~ 7171805 (-)
G103395 NA other downstream 216569 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 639709 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 824624 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 835992 5115715 ~ 5129141 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other downstream 1314727 4642652 ~ 4650406 (-)
AMCG00010988 NA other upstream 654263 6628570 ~ 6644723 (-)
G103832 NA other upstream 1963830 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2845244 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 3247961 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 3627070 9601377 ~ 9619279 (-)

Expression


Co-expression Network