AMCG00010970


Basic Information

Item Value
gene id AMCG00010970
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6074611 ~ 6077628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010970
ATGGCAGATGTTACAAGTTACAAAGACACCACTAACCGCCACCTGCGGCACAAGCTGCAGAGCCTGGGCCGGCGGCTGGAcgagctggaggaggccaccAAGAACCTGCAGAAAGCTGAGGATGAGCTCCTGGACCTGCAGGACAAGATCATGCAGGCTGAGGGCAGCAGCTCCTCCCTGCTCAACGATGTGGACACATTACGCAAGCGAGTGCTGAAGATTGAGGGCAAGGATGAGGAGGTGCGCAAGGCCGAGGACCTCTGCAGGCTGGTCCGGGAGaagctggaggaagaggagaagctGACCAAAGAGCTGAAGTCTGAAACTGAGCATCTGCAGAGTAGGATGGCCGAGCTGGAGAAGCTCGAGGAGGCCTTTAGCAAGAGCAAGTCTGACTGCACGCAGCTCTGCCTCAGCCTGAATGAGGAGAAGAACCTGACCAAGAAGCTTTCATCTGAGTTGGAGACCCTGAAAGCCAGACTGAAGGAGATGGACTCCTCGGAGAGCCGACtggacagagcagagcagaccTTGAATGCAGAACTGGAAAAGCTCAAGACCCTGGCAGTGAGCTTTGTCAATGAGCGGAAAAGGCTGCTGGAGAAGCAGAAGGAAGATGAACAATTAATCCAAGAGCTGACCCAGAAACTTGAGCACAACAACAAGATCAACACTGCAGACCAGAGTAGGAATGCCTCCAACCTTCTGGAGCGCTCTTCTGAGACTGGGGACCTCCGTATTGAGGATGAGCTGTCTCCTGGTTTGACCAGCAAACTTGGCATAAGGAAAAAGAGCTTGGATTTTCTGAAGCTGACTGACGACATAGGCCTAAGAAGCAAATCAGAGAATGAAAAGAACAGTACAGACGGTCAGGAAGATAATAAAGTAAAGGATCTCAACCAGGAGATAGAGAGGCTCAAAAACCGCTTGAAGCAGTTGGAACTGATGGAGGAGGACTTCAAGAACACTGAAGCCAAGAATGGAGAGCTGCAGGAAAAGTTCCTGCAAGAGAGAAATCGGAGTAAAGTGCTTAGTGACCAGGTGGAGCAGCTGAAGCTGCAGCTTGGCAGTACCAAAATCCTTGAGAATGGCAAAGCCGAAAATGAGGAGATTAATGTCCGGGGCGGTTTCAGACAGGAGAAGCCCAAGTACAGGAGTGTGGCTGCTGAACCACCTATTTCCAACTACAAACCACGTGAGCTCTCTCCTCAGCAGAGGCGGGAAGCAAAGATAAGGAACAATAATCTGAATCAGTCAGGTGAAAGCTCTCCTAAATCTGTCAGGAGGGCTCTCAGTCCAGGAGTAAAGGGCAGAAGAGTTGGGAGACCTGGTGATATTGCAGTAAGGGAAAGAGGAAGGGCAGTAGAACCAGCAACCAGTTATATGTCAACAAGCACATCCCTCAGTGAAGGaaagaaagtaaagaaaacaagGGAGCAACCCTCTGTTCTCAGTCGCTATCCTCCCGCTGCTAATGACCAGAGTGTCCAAAAGTCCTGGAAAGAGTCTTTGAAGTCTAGTGAAAATGAGggtaagaaaaaacaaactgagagGTTTTCTAAGTTGTACACTGGCAGCGACAGTGAATCCAACAACTCAGATGTGCCTTTGGAAATCTCAAGTAAGACTTCCAGTGTACTACCCCCCGAAAAGGAGATGTTCAACTCGGAACCCTTGGATCACCTGGAGGAGACCCTAGTGACAACCTATATGTCGGCAAAGCCTAACGGATCGATTTCTAGCTATAGGTCCCCTGTGTCTGCTTTGGCACAACTTGAGCATGGGTCAGAGAGCCCTTCTTCGGCCTCAGAGACTGAATCTACAGGATCCAGGCGCTCACTAGGAGAAACGGAACCTGTTCCCGAGGTCACTGCATTGAGTGGCAGGTCTGCTGTTTCAAAGCACCACAGATATTCCCGGTTGCAAGATTCCCACTCAGAAGCTTCATCCACTCGAAGTTCCTTTGAAGAAGAGGCACCTAAACCTCTAGGCAGGGAAGGTAGTTTATCAGAGGCCACCCACACACCCTCAGGCATCGAAATCCGCAGAGTCTGCAGCCCCAGGGAGGCCCTGCGATCCAAAGCTGTCATTAAGCCAGCCATCGTGGAGATCGACCGTAAAGAGGTGATGTCCGGCACGGGGGTAGAGCCTTTGCCCTCTGACGGCAAGCCCAAGATCTCCACCAAACCCATCTTGAACAAGATGACCAGTAGCATCACAATTTACCCCAGTGACCCCACCTCTTCAAGGGCCAGCAGCCGCAGCCggagcagtagcagcagcagtgagctgTCCAGGGAACGTCATACTTCCACCAGCAACATAGTGATTACCCCCACCACTGAGCACCGCAACAGTGTGTCCATCCCCTATGAAATCTCCATCCCTAAGAGTGAGATCTCATGCAAGCCTTCCCTGGATGCTGAGGAGCCTGAGCCACTGGTGGAGGTGAAGACGGAGACTCGGCTCTCCAGGAGCAGTTTCACCATAAAGCCCCCAGAGCCGGAGCTGAACAGCAACAAGAATGACGAGTCTGGATTTGAGAGTGGCGGTGGAGGTGGCACCACTACCACTACTACAACAGTCACCAGCTGGAGGAACCAACAGTCCAAGGAAGATGCCGGTGTGGACTTGAAGAATGTGACCGTGAGGAGCACGTGGAGGAACAAGCAAGGCCTTGTGGAAGAGAATCGAGGTCCCAGGATAGATGCCCCAGAGGAGGAGACTGAATCTTCCAGCACCTGGAGGGCTTACCGGGCCACTGCGGTCCTGGACTCGGAGGAGACCTCCCGTAGCTCAAAGCCCAGCCCCGCTGAGGTATACATGCGCAGGATACACAGTGTGGTGACGGCCCGGGAACCCCCAGAGCCAGTTCGTAGGAGCCAAAGCACCATGAGCGTGTTGGACAGCGTCATTGAGAGGACCCAGCCCCACGAGCCCGTCATCGCTCAGGAACTGATATCCTGGAAACGCATCAAATCCCCAGTAAGTACATGGAGCAAAGATTGCATACTTTGA

Function

GO:

id name namespace
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007265 Ras protein signal transduction biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:1902531 regulation of intracellular signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010970 True 3018 mRNA 0.52 1 6074611 6077628

Neighbor

gene id symbol gene type direction distance location
AMCG00010972 NA coding downstream 42187 6028880 ~ 6032424 (-)
AMCG00010971 dnajc8 coding downstream 59794 6003963 ~ 6014817 (-)
AMCG00010968 NA coding downstream 85332 5977922 ~ 5989279 (-)
AMCG00010965 pacrg,LOC107697704,LOC107583491,LOC107695182 coding downstream 149833 5905146 ~ 5924778 (-)
AMCG00010959 NA coding downstream 306337 5748383 ~ 5768274 (-)
AMCG00010973 htr1d coding upstream 95180 6172808 ~ 6173935 (-)
AMCG00010975 hnrnpr,LOC105896414,LOC106562977 coding upstream 316072 6393700 ~ 6398157 (-)
AMCG00010978 rpl13a coding upstream 322998 6400626 ~ 6404255 (-)
AMCG00010980 NA coding upstream 336511 6414139 ~ 6415012 (-)
AMCG00010976 NA coding upstream 341754 6419382 ~ 6422777 (-)
G103362 NA non-coding downstream 458758 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 696385 5359975 ~ 5378226 (-)
G103309 NA non-coding downstream 740354 5331732 ~ 5334257 (-)
G103149 NA non-coding downstream 1649039 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 1921863 4152518 ~ 4152748 (-)
G103473 NA non-coding upstream 306853 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 436235 6513863 ~ 6514123 (-)
G103539 NA non-coding upstream 546453 6624081 ~ 6627452 (-)
G103556 NA non-coding upstream 677665 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 1038356 7115984 ~ 7171805 (-)
AMCG00010966 NA other downstream 100304 5965133 ~ 5974307 (-)
G103395 NA other downstream 326047 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 749187 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 934102 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 945470 5115715 ~ 5129141 (-)
AMCG00010988 NA other upstream 550942 6628570 ~ 6644723 (-)
G103832 NA other upstream 1860509 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2741923 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 3144640 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 3523749 9601377 ~ 9619279 (-)

Expression


Co-expression Network