AMCG00010971 (dnajc8)


Basic Information

Item Value
gene id AMCG00010971
gene name dnajc8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6003963 ~ 6014817 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010971
TCCACAGTCACGTGTCAGAGGGCACACCACGTGATATGTGGTTGAGCCAAGATGGCGGCTGCAGGGGGAGAGCCGGGCACTGCTACTGATGTTGGAGACGAAGCTTTCCAGGTTTTTTACACGGAGGTGAAGCAGATTGAAAAGAGAGACTCTGTTTTAACCCCCAAACAACAGATTGAAAGATTAACCAGGCCAGGggcttcatattttaatttgaacccTTTTGAAGTCTTGCAGCTGGATCCAGAAATAACAGATGATGAAATCAAGAAAAGGTTTCGCCAGCTCTCAATCCTGGTCCATCCTGACAAAAACCAAGATGATCCAGAAAGGGCCCAGAAAGCCTTTGAAGCTGTTGATAAAGCCtacaagctgctcctggattcgGAGCAGAAGAAGAGGGCCGTTGATGTGATTCACGCAGGCAAGGAGTACGTGGAGCACACGatgaaagagaagaagaagcagCTGAAGAAGGAAGGAAAACCGACTGTAGTGGAGGAGGATGACCCAGAATTGTTCAGGCAGGCGGTGTATAAGCAGACGATGAAATTGTTTGCAGAACTGGAGATcaagaggaaggagagggaggccaaGGACATGCATGAGAGgaaacGACAACGGGAGGAGGAAATTGAAGCGCAGGAGAAAGCCAAACGGGAGAGGGAGTGGCAGAAAAACTTTGAGGAAACGAGGGATGGCCGCGTGGACAGCTGGCGGACCTTCCAAGCCAAAGGCAAGACtaagaaagagaagaagaatCGCTCTTTTCTCAAGCCACCGAAAGTGAAGATGGAGCAGCGATAAGCAGAatCTATATTTATAATCCCCGGCCCCTCCTGAGGAGAACTTCACCGTGTACAGATTAGACTAACTATtcatttgggattttttttttaatataacctCAGATACAATCTCTGTTAAAAAATTAGGATTATTTTTGTAGTGCTATTAGTGTAGACTTTCCTCAAATTCAGCTGTaaatatttccaacagtataCGTAATTGGAAGTGTCCAATTCATACAACACTTCCTTCTAGTTCTTTGAAATACCCTGCATCTCCTGATCTCAATAATAATCCATGTTTCagacctacatttttttttttcccccaataaaGCAAGCCTCACGTTTTAGGTGACACCcttgtggagagagagaaaaaataccttcagcatttctttaattataaaacaaggACATAAGTCTTCAACCTCATGCATAACCTTAAACAAACGCACACAGTCATTGTTAAAATAAGGTCAGATATTTTAGATTTGAAGGTGTTAACTTTTAATTGTGTAGATTTGTGTGTATAAATTACCATTGCATTTCTTCCACATTACTGTACATCTGTAGGTGCTTTTAATGCCGTAAATACAGTGGCATTCAAATGATTCCATGCAGTGAAATTATTCtgcaaaatcaaatcaattatgCTATTTTACAGCTTTTTATGTCCTTGTTTTAAAACCACACTTAAGCTGGTATCATGAAATTGTCTATTTGTTAAATACTGAAAGACCAATCATATCTCTTTTTGCAATATGCATACAGTCCTCAGTGTTTAAATTCTGGCTATACTTTTATACTCCTACCCACCCCTCCTCTGTAAAAATATCCTATGTATTCTTCGTTAAGAGAAAAGGTGAGATGGGGAACAAAAATTACCTTTTCACTTAGATCACCAGACGTTTAGTTTGTGAGATTGTTCATTTAAAGAGACTCTTGCATTGCATTTTGCTGTACTAGGTGATTTACagaagtgtcttttttttttttttttttgtattgtaatgtcGGCAGAGGATTCTGTAACATCTCAATTAAATCGAATGTTGAAAACGTCATTTCATAATTTGGTTGTACTGTTTCGTGCTTTGGTGTGCAATGATGCTGTTCTTTCAGTGCATGTGAGCAAACTAAAGGTGGATTAAACCCTTGGTGGCACATTT

Function

symbol description
dnajc8 Predicted to be active in nucleus. Orthologous to human DNAJC8 (DnaJ heat shock protein family (Hsp40) member C8).

NR:

description
PREDICTED: dnaJ homolog subfamily C member 8

GO: NA

KEGG:

id description
K09528 DNAJC8; DnaJ homolog subfamily C member 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010971 True 1960 mRNA 0.40 10 6003963 6014817

Neighbor

gene id symbol gene type direction distance location
AMCG00010968 NA coding downstream 14684 5977922 ~ 5989279 (-)
AMCG00010965 pacrg,LOC107697704,LOC107583491,LOC107695182 coding downstream 79185 5905146 ~ 5924778 (-)
AMCG00010959 NA coding downstream 235689 5748383 ~ 5768274 (-)
AMCG00010961 NA coding downstream 286745 5705767 ~ 5717218 (-)
AMCG00010960 NA coding downstream 310178 5693444 ~ 5693785 (-)
AMCG00010972 NA coding upstream 14063 6028880 ~ 6032424 (-)
AMCG00010970 NA coding upstream 59794 6074611 ~ 6077628 (-)
AMCG00010973 htr1d coding upstream 157991 6172808 ~ 6173935 (-)
AMCG00010975 hnrnpr,LOC105896414,LOC106562977 coding upstream 378883 6393700 ~ 6398157 (-)
AMCG00010978 rpl13a coding upstream 385809 6400626 ~ 6404255 (-)
G103362 NA non-coding downstream 388110 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 625737 5359975 ~ 5378226 (-)
G103309 NA non-coding downstream 669706 5331732 ~ 5334257 (-)
G103149 NA non-coding downstream 1578391 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 1851215 4152518 ~ 4152748 (-)
G103473 NA non-coding upstream 369664 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 499046 6513863 ~ 6514123 (-)
G103539 NA non-coding upstream 609264 6624081 ~ 6627452 (-)
G103556 NA non-coding upstream 740476 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 1101167 7115984 ~ 7171805 (-)
AMCG00010966 NA other downstream 29656 5965133 ~ 5974307 (-)
G103395 NA other downstream 255399 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 678539 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 863454 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 874822 5115715 ~ 5129141 (-)
AMCG00010988 NA other upstream 613753 6628570 ~ 6644723 (-)
G103832 NA other upstream 1923320 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2804734 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 3207451 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 3586560 9601377 ~ 9619279 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000117_00674637_00677873 DNAJC8 coding CI01000117 null 674106 ~ 678021 (+)