AMCG00010983


Basic Information

Item Value
gene id AMCG00010983
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6520570 ~ 6535796 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010983
ATGATTTCCAAGCCAGTTGCAATGGATCTGTCATTTTTATACCAGGGCTTTTGCTTTGAAATCCGCACTGCTACCTTGAGCATTGGCATCTACTATGTGGTAACCAGTTTCCTGGTGTGCATCGACTTGATCTTTGGTGTCGTGAAGGGGAAAGATTTCTGTGGATTCATCCAGACCGCAGATTACCCCAAAGGAGAGCGCATCTTTGACACCACCACCAACTTCATCCTAGTTGCAGTCATGATAATCACAAGCACCTACCTGCTCCTTGGAGTCCGCAAGTACCGGGAGCGCCTGCTCATCCCCTTCATCATTCTGCTGTTCCTGGACATCGTTCTGAGTGTGATGTCACTATTCAGGGGAGCCTGGGGGCTCCCGGGGACCTTTACCTATGAGGAAGCCACCGTGATGTGGAACTATGCCAGTGTGAAACATGAGCTGTCTCTGCAAGACACCGCACGTCTGACCATGATCTTCGGAGTGATCTTCATCCTGTACGTTCTCATCAAGGTGTACATGATGAACTGCGTGATGAACTGCTACACGTTCATCAAGTTACACAACATCCAGGCGAGGGGCAGCAAGGCTCAGAGCAGGAGCACTGTGGTTGAGCTGCCATCTTACAGTGAAGCTGTGAAGCTGCCCTCCAAGGATTCACCCCCTGAATACCAGGAGCACGAGGAGCCGCTGGCCTGACTGCAGCGATGAAGCATATTAGAGGGGCGTCCATAACACCCTCCAGCCTTGCAACCTGCCCCGTCCCTTAAGGGCAGCCAGTACTGCTAAGCATTAGGATGCCAGCAAAGTTACTGCAGCAATTTGTGGAGATTCATCAGCTAAGGAAACGTACTGTCATGTCTGTAATGAATGTTCACCATGCACAATAACATTTGATtcctgtgatttgtttgttgtaacaaatatatatatattttgcaaccTGGGTGAACTACCATATCATGAATTCATGGCACCAGGTACAGGATAAATACATCAATCTCCCTAAATAATACAATCTGTAACTGATATGTTTATCTTAACCTCCTTTGGcagattattcatttttaatcagaTGTACATTTATAACAAGTGAAAAACATATACCCTTTTATTCAGTAACCTTATTGCTTGGTCAGTGGATTGAAAGCTCAAAGAAGTCCATGAAAatcatgttgtgtttgtttatttatcttggGTAGATATTAGCTGGTCTAACATGGTCAGTTAATTTCACCCATGAGATTtgcttataatataataaaatgcaatagcTTAGCAAATGCAGATGGTTTCACTGCCAGGTGTTTAACGTGTTTCAGTAtctgttttaagaaaataaaaccat

Function

GO: NA

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010983 True 1345 mRNA 0.44 7 6520570 6535796

Neighbor

gene id symbol gene type direction distance location
AMCG00010984 NA coding downstream 10647 6475982 ~ 6509923 (-)
AMCG00010977 NA coding downstream 77829 6423566 ~ 6442741 (-)
AMCG00010976 NA coding downstream 97793 6419382 ~ 6422777 (-)
AMCG00010980 NA coding downstream 105558 6414139 ~ 6415012 (-)
AMCG00010978 rpl13a coding downstream 116315 6400626 ~ 6404255 (-)
AMCG00010982 NA coding upstream 20852 6556648 ~ 6560924 (-)
AMCG00010985 NA coding upstream 58859 6594655 ~ 6612752 (-)
AMCG00010987 NA coding upstream 229030 6764826 ~ 6775506 (-)
AMCG00010992 ppce,LOC107654745,LOC107710331,LOC105909065,LOC107602379 coding upstream 389974 6925770 ~ 6938226 (-)
AMCG00010997 NA coding upstream 577839 7113635 ~ 7126366 (-)
G103503 NA non-coding downstream 6447 6513863 ~ 6514123 (-)
G103473 NA non-coding downstream 133966 6384481 ~ 6386604 (-)
G103362 NA non-coding downstream 904717 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 1142344 5359975 ~ 5378226 (-)
G103309 NA non-coding downstream 1186313 5331732 ~ 5334257 (-)
G103539 NA non-coding upstream 88285 6624081 ~ 6627452 (-)
G103556 NA non-coding upstream 219497 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 580188 7115984 ~ 7171805 (-)
G103658 NA non-coding upstream 653289 7189085 ~ 7189583 (-)
G103666 NA non-coding upstream 695158 7230954 ~ 7233314 (-)
AMCG00010966 NA other downstream 546263 5965133 ~ 5974307 (-)
G103395 NA other downstream 772006 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 1195146 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 1380061 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 1391429 5115715 ~ 5129141 (-)
AMCG00010988 NA other upstream 92774 6628570 ~ 6644723 (-)
G103832 NA other upstream 1402341 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2283755 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 2686472 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 3065581 9601377 ~ 9619279 (-)

Expression


Co-expression Network