AMCG00010986 (fabp3,LOC108426441,LOC105892250,LOC107669374)


Basic Information

Item Value
gene id AMCG00010986
gene name fabp3,LOC108426441,LOC105892250,LOC107669374
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6754924 ~ 6762123 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010986
GGGGGAAGGGTCTTATTGACAGGCAGTCCACAGTCCTGCTGACCTTTCCTGAATCAGTCCACAGTGGAGGCTGCCTGTGCATCTGGAATCtggaatctctctctctcactctctctgccaTCCCCTCCCCCCTGCTCCCTCTGTCTGCACTTCATTCACTCCATGCAGACGCCTCGACCCTGTACCTTTCTCCCCCTAAATTCTTCACTGTTCACCCTGTTTCGCCCCAAGTCCTTTGTCTCTCCATACCTCAGAGCCTGTTTCTCCACATTCTCATAAATTTTCTCCCTCGctttcccctccccctctaGTCTATGACATCACAGTCTGTCTATAAAACCCTCCAGTAGCAAGACGAGCTCTGTGGGCTGCTGCTGACTCTCTCTCTTGCTATCAGTATTACACATAGCGATCTCCTCTCTGCCGACTGCAACCACAACCCTGCAGACATCATGGTTGAGGCTTTCGTAGGAACCTGGAATTTGCAGGAGAGCAAGAACTTTGATGATTACATGAAGGCTTTAGGTGTGGGATTTGCAACCAGACAGGTCGGCAGCATGACCAAACCCACCACCATCATCTCACAGGAAGGAGACACGATCATACTGAAGACACAGAGCACTTTCAAAAACACAGAGATCAAATTCAAATTGGGCGAGGAATTTGATGAAACCACAGCTGATGACCGGAAAGTCAAGTCTTTAGTAACGTTGGAGGGAGGAAAACTAATTCATATTCAAAAATGGAACGATAAAGAGACCTCACTGGTGAGGGAAGTCAATGGAAACCAACTCGTACTGACTTTAACAATGGGAACCATAGTGAGCACACGGTCGTATGTGAAGGCAGAATGAAGGATCCCAGAACTTCAAGATCAACTATCAAGATGTTCAGCCCCTCAACACCCCTACAGCCCCTATACCGCAGAGTACATATATTATGGGTCCATCACACCTCACTGCTGGTCTATTCTAGGTGTCTGTCAGTATTCTGGCCATTGAGCACTACATGTCACACTGGGTTTTCAGCTGgaagtaaatgtttaaaataataaaattctAAACAAAACCCCATCCA

Function

symbol description
fabp3 Predicted to enable lipid binding activity. Acts upstream of or within chordate embryonic development and heart looping. Is expressed in several structures, including immature eye; muscle; nervous system; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human FABP3 (fatty acid binding protein 3).

NR:

description
PREDICTED: fatty acid-binding protein, heart-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08752 FABP3; fatty acid-binding protein 3, muscle and heart

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010986 True 1077 mRNA 0.47 4 6754924 6762123

Neighbor

gene id symbol gene type direction distance location
AMCG00010981 NA coding upstream 244962 6493616 ~ 6509962 (+)
AMCG00010974 NA coding upstream 343128 6408918 ~ 6411796 (+)
AMCG00010969 kdm1a coding upstream 703257 6035491 ~ 6051667 (+)
AMCG00010964 NA coding upstream 767244 5977850 ~ 5987680 (+)
AMCG00010967 NA coding upstream 777109 5977080 ~ 5977815 (+)
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding downstream 13441 6775564 ~ 6782856 (+)
AMCG00010991 nkain1,LOC106570599,LOC107593567 coding downstream 109700 6871823 ~ 6881274 (+)
AMCG00010993 NA coding downstream 241960 7004083 ~ 7022923 (+)
AMCG00010995 NA coding downstream 345162 7107285 ~ 7110941 (+)
AMCG00010996 ppp1r8a,LOC105012537,LOC108441741,LOC105903676,LOC108272406 coding downstream 382616 7144739 ~ 7148896 (+)
G103541 NA non-coding upstream 117736 6636963 ~ 6637188 (+)
G103540 NA non-coding upstream 124934 6628488 ~ 6629990 (+)
G103538 NA non-coding upstream 127486 6623485 ~ 6627438 (+)
G103501 NA non-coding upstream 241106 6513312 ~ 6513818 (+)
G103470 rpl13a,LOC107720993 non-coding upstream 350621 6400638 ~ 6404303 (+)
G103567 ppce,LOC107688393,LOC106923076,LOC103154994,LOC107592053,LOC107706142,LOC107654745,LOC106588491 non-coding downstream 144979 6907102 ~ 6927247 (+)
G103599 NA non-coding downstream 199863 6961986 ~ 6962191 (+)
G103670 NA non-coding downstream 546482 7308605 ~ 7309609 (+)
G103684 NA non-coding downstream 611552 7373675 ~ 7384727 (+)
G103688 NA non-coding downstream 627879 7390002 ~ 7452292 (+)
G103542 NA other upstream 112296 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 359440 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 2112521 4634472 ~ 4642403 (+)
G103078 NA other upstream 2671338 4049938 ~ 4083586 (+)
G103030 NA other upstream 3174647 3577235 ~ 3580277 (+)
AMCG00010990 pum1 other downstream 130274 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 309310 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 1786240 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 2768351 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 3441494 10203617 ~ 10271863 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location