AMCG00010988


Basic Information

Item Value
gene id AMCG00010988
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6628570 ~ 6644723 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010988
ATGTTGGCAGAAGAGTTAACCATGGCATCAGATCAGGAGGCATTTCGCTGGCCCAGAAACTCGGAGGAGCAGCCCCCGACTTACCTGGAAGCATCAGGCAGCAACCCGTTTTATGACGATGAAGATTTATACTCTGGCTCGGGCTCTGGCTTCCCAGACATAGACTTCAAGACCAGGACCAAGCTGACATTCACTACAGAAGTGCCAGTACCCCTGTCCACCACCCAGGCCACCTCCCTTGCCCCATCCGTGCCCCCAGCTGCGATGCCTACGGGAACCCAGAGTGTGCCAGGAGTGGAGAAGGAGAGCAGGGCCCCCGCAACTGAGTCCGTCCGCCGACAACCCAGCCCAGCCGCCTCCATCCCCATGGCCACCACCAGCTCGGTCACCACCACAGCCCAGAAAACGCCTCCCACCACCAGCCTCGTGGACTTCAGCTCCACggtggaggagaaggaggatgTGTTCATCCCTGTGGACAGCACCGAGGAAGCCACTACAGTGCTGCCCACCGTGGAACCCACCAcagctgccaccaccaccactactaccaCAACAGCAGCCCCACGCAGAAAAACAGCCTCTACAACTACCACCACCGCGGCGGCTTCGACCGCTGCTACAACCACGACCCTGGCCCCTACCACAACTACAACCATGACAGCAACCACAACCCAGGCCCCCACCCCGGCCGCCACTGTCCGGCCTCGGGCAGCTAAGACCACCACCCAGCTCCCAGGCATCCAGATCCAGACGGAGCTGACCACCACTGGGCTGCTGTTCACCTCCGTCTCCAAGaCTCAGACACCAGAAGAGACCCTCAATAACGAGGTAGGTGGGGCTGGGAATAGCGGTGATTTCGAGATCCGAGAGGAGGAAACCAACAACGAAGTCCCCAGGGACAAACCTAAAACCCCCACAGACAAGATGGAGCCAGATCTCCTGGGCAACACCATCGACACAGGCAGCTCTGCCGCCCAGCTCCCACAGAAAAACATCCTGGAGAGGAAGGAGGTCCTCATAGCCGTGATGATGGGAGGCTTGCTGGCAATGATCTTCGCAGATTTCCTGGTGATAGCTGTGATCGTGGGTGGTGTGGTTGGGGCCCTCTTCGCTGCCTTCCTCGTCATGCTGCTGGTGTACCGAATGAAGAAAAAGGATGAAGGCAGCTACACGTTGGAGGAGCCCAAGCAAGCCACAGTAACCTACCAGAAGCCCGACAAGCAAGAGGAATTCTATGCATAACCAGCGGCTGCCCTGAGAGTGCCTATTGCTCCACGGACTGTGAACACAAAGAGAACTCTcttttaaagtaacaaaataaaaacaatacaaaaaaaaagaaaacggaaaaaaaagaaaaagttttttattattattataattataataataattataattattattattattattattattatttttttttttaagttctagCTCCTTAACTTTTTCCAGCTCAGTTGTTTTCAACCATTAGTCCCAGCACTGGAAATAAAAGAGAAGGTGGAGGGGGGAAATGTCATTGGACAGGGATATGTGGTGCAGGAAAAGGAGCTGTGGTTGAGTTATCAAGTCTGTTTCCTTATTTCTTTCCCTTAAAAGCTACTGAGGTCTGAGTGAAATGCAGCGCCATCTGTGTAATGAGCTGATTtgaatcagtttatttattaagattaCAAGACAAATGCTGTTCACTGGGTGCTTGTCACTTTAGTACATTTCaggtgaaaatataattaaagtgcAGGACTGAAGGAAAGCTGAAGAAATTTAAGTGGTCCTAGTTGATTACATAATGCGTGATTAAATGAAAGTTGCTGCCGCTAAAGTGAATTACGGGATTAAATCTGAATTCTGTTTGTCATGCCTGCACTGTAGAACTGAATTTCCAGTGCTTTGCCTCTGGAACGCAGTTAGTCTGCCATCGACTCGTCATGCCTGcccataatttaaatgtaaaagagaCTATATCACACAAAGATTCAATGTAGTGCCTTTCACTTCTCCTTAGGCGTTATGTTGTTTATATCAATATCAGTATCAATATCAACCAAACGTTTTAGATGAACAAATTTAGACCCAACCtgttgtgctttaaaataaatgtatacattatagattaaatacattcaataaaaactagGAAAAAATACTAAAGCATTGCCCTTCATCAGCTATTGGTTCAACTATTTCCGCTCTCTTTCCAGCTTCCTGTATGAGTTGTGTATAAAGAATCGCCTGTTTTCAATATGTGTGTATGGTTCATTGTGCCATTGAAAGAGGTTTAACCAAGCCTCTGGATTATattgagaaaattaatttctcagtatatatatatatatatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttga
>TU129375
CATTGTGCCATTGAAAGAGGTTTAACCAAGCCTCTGGATTATattgagaaaattaatttctcagtatatatatatatatatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttaga

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K16337 SDC3; syndecan 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010988 True 2406 mRNA 0.47 6 6628644 6644723
TU129375 False 208 lncRNA 0.35 1 6628570 6628777

Neighbor

gene id symbol gene type direction distance location
AMCG00010985 NA coding downstream 15818 6594655 ~ 6612752 (-)
AMCG00010982 NA coding downstream 67646 6556648 ~ 6560924 (-)
AMCG00010983 NA coding downstream 92774 6520570 ~ 6535796 (-)
AMCG00010984 NA coding downstream 118647 6475982 ~ 6509923 (-)
AMCG00010977 NA coding downstream 185829 6423566 ~ 6442741 (-)
AMCG00010987 NA coding upstream 120103 6764826 ~ 6775506 (-)
AMCG00010992 ppce,LOC107654745,LOC107710331,LOC105909065,LOC107602379 coding upstream 281047 6925770 ~ 6938226 (-)
AMCG00010997 NA coding upstream 468912 7113635 ~ 7126366 (-)
AMCG00011003 NA coding upstream 663916 7308639 ~ 7309421 (-)
AMCG00011006 NA coding upstream 720519 7365242 ~ 7390566 (-)
G103539 NA non-coding downstream 1118 6624081 ~ 6627452 (-)
G103503 NA non-coding downstream 114447 6513863 ~ 6514123 (-)
G103473 NA non-coding downstream 241966 6384481 ~ 6386604 (-)
G103362 NA non-coding downstream 1012717 5558677 ~ 5615853 (-)
G103329 NA non-coding downstream 1250344 5359975 ~ 5378226 (-)
G103556 NA non-coding upstream 110570 6755293 ~ 6762139 (-)
G103645 NA non-coding upstream 471261 7115984 ~ 7171805 (-)
G103658 NA non-coding upstream 544362 7189085 ~ 7189583 (-)
G103666 NA non-coding upstream 586231 7230954 ~ 7233314 (-)
G103794 NA non-coding upstream 1132285 7777008 ~ 7779941 (-)
AMCG00010966 NA other downstream 654263 5965133 ~ 5974307 (-)
G103395 NA other downstream 880006 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 1303146 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 1488061 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 1499429 5115715 ~ 5129141 (-)
G103832 NA other upstream 1293414 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 2174828 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 2577545 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 2956654 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 3096410 9741133 ~ 9743785 (-)

Expression


Co-expression Network