AMCG00010991 (nkain1,LOC106570599,LOC107593567)


Basic Information

Item Value
gene id AMCG00010991
gene name nkain1,LOC106570599,LOC107593567
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6871823 ~ 6881274 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010991
ATTTACCTATCCTCTAACTGCAGAACTCTCTCTTTCACCTCTCTCTTCTTTCAGGTAGCAGCCCTGGAGAGACAGATATTCGATTTCCTGGGGTACCAGTGGGCGCCAATCTTAGCCAACTTCCTTCACATCATGGCAGTCATTCTAGGGATTTTTGGCACCATGCAGTACAGATCCCGTTATCTCATTATGTACGCTTTGTGGCTGGTCCTATGGGTTGGGTGGAACTCTTTTATCATCTGTTTCTACCTGGAGGTCGGCCATCTCTCTCAGGACCGGGACTTCCTGATGACGTTCAACACCTCGCTGCACCGGTCCTGGTGGATGGAGAACGGGCCCGGATGCCTGGTAACCCCAGTGCTCAACTCCAACCTGGCTCCAGACGACCACCACGTCATCACGGTGTCCGGCTGCCTGCTGGACTATCAGTACATCGAGGTGGTCAGCAGCGCTTTGCAGGTCTTCCTGGCGCTCTTCGGTTTTGTGTACGCCTGTTACGTCAGCAAAGTGTTCCTGGATGACGAGGACAGCTTCGATTTCATTGGTGGCTTTGACTCCTACGGATACCAGCCCCCTCAGAAGACCTCTCACCTGCAGCTGCAGCCTCTCTACACGTAG

Function

symbol description
nkain1 Predicted to be involved in regulation of sodium ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human NKAIN1 (sodium/potassium transporting ATPase interacting 1).

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1

GO: NA

KEGG:

id description
K22735 NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010991 True 618 mRNA 0.53 5 6871823 6881274

Neighbor

gene id symbol gene type direction distance location
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding upstream 88967 6775564 ~ 6782856 (+)
AMCG00010986 fabp3,LOC108426441,LOC105892250,LOC107669374 coding upstream 109700 6754924 ~ 6762123 (+)
AMCG00010981 NA coding upstream 361861 6493616 ~ 6509962 (+)
AMCG00010974 NA coding upstream 460027 6408918 ~ 6411796 (+)
AMCG00010969 kdm1a coding upstream 820156 6035491 ~ 6051667 (+)
AMCG00010993 NA coding downstream 122809 7004083 ~ 7022923 (+)
AMCG00010995 NA coding downstream 226011 7107285 ~ 7110941 (+)
AMCG00010996 ppp1r8a,LOC105012537,LOC108441741,LOC105903676,LOC108272406 coding downstream 263465 7144739 ~ 7148896 (+)
AMCG00010998 NA coding downstream 276216 7157490 ~ 7165268 (+)
AMCG00011001 med18,LOC106605104 coding downstream 308947 7190221 ~ 7199316 (+)
G103541 NA non-coding upstream 234635 6636963 ~ 6637188 (+)
G103540 NA non-coding upstream 241833 6628488 ~ 6629990 (+)
G103538 NA non-coding upstream 244385 6623485 ~ 6627438 (+)
G103501 NA non-coding upstream 358005 6513312 ~ 6513818 (+)
G103470 rpl13a,LOC107720993 non-coding upstream 467520 6400638 ~ 6404303 (+)
G103567 ppce,LOC107688393,LOC106923076,LOC103154994,LOC107592053,LOC107706142,LOC107654745,LOC106588491 non-coding downstream 25828 6907102 ~ 6927247 (+)
G103599 NA non-coding downstream 80712 6961986 ~ 6962191 (+)
G103670 NA non-coding downstream 427331 7308605 ~ 7309609 (+)
G103684 NA non-coding downstream 492401 7373675 ~ 7384727 (+)
G103688 NA non-coding downstream 508728 7390002 ~ 7452292 (+)
G103542 NA other upstream 229195 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 476339 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 2229420 4634472 ~ 4642403 (+)
G103078 NA other upstream 2788237 4049938 ~ 4083586 (+)
G103030 NA other upstream 3291546 3577235 ~ 3580277 (+)
AMCG00010990 pum1 other downstream 11123 6892397 ~ 6920931 (+)
AMCG00010994 NA other downstream 190159 7071433 ~ 7103508 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 1667089 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 2649200 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 3322343 10203617 ~ 10271863 (+)

Expression


Co-expression Network