AMCG00010994


Basic Information

Item Value
gene id AMCG00010994
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7071433 ~ 7103508 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010994
gcctgcctgcctgcctctgtCAGGGAAATGTTAGCAGACCAAATACAGTCTGGGAGCTCATGAGAAGCAGAACTTTTGGAAATTTCCcacttgttttcttcttctttctttctttattttttgtatactaCAGCCACAAATTTGGGGACATGCTGCTTTTAGATTTTCAGTGAAAGCTGTCTGCCTTCTGGAAGAAAGTTAAACTTTGGCAGAGAATCGGAGAGCTATACTGTATATGTGcgtatatatacattatacattgtCCTCTACAAGCATCTTGTCGCTGCTTCTGCTCATGCCAGCCAACTGAACCCAGGGAGCCGAGTAGAGAGCAGCAACTTCATTAcgtctctccgtctctctccctctggaATATGTGCGGATAATAAGACGCCGATCATTAGTCTCTCTTTGAGGTGTGAAGAAGTTACACAAGAGACCATTATGGATGTCAAGAAGATAGAGATGGAGCTCCTAAGCAACAGCATTGCGGCCTACGCTCATATCAAAGAGAACCCGGAGAGCTTTGGCCTGTACTTCATGATGGGCGTGTGCTTCGGGCTGATCCTGACCCTGTGCCTGCTGGTGATCCGGATCTCCTGCAAGCCACGCACCGAGATGCCGGCAGAGAAGAAGGCCCTGAAGGAGTGCagcgaggaggaggacgagAGCGAGGATGAGGACGTCGAGCCGCCCCACCCGGCCACGGACATCGCCATGGGCAACCACAGCCAGTCGGACGGCACGCTTGGCGTCAACGTGTTCACGTCGGCCGAGGAGCTTGAGCGGGCACAGCGGCtcgaggagagggagaggatcaTCCGGGAGATCTGGAGGAACGGGCAGCCTGATATCCTGGGCACCGGGACGGGCACCATCGGGAGGGTGCACTACTATTAACGCCAGCTGGGCTCCATCTCCAGCAATTAACCAACTCGCCAAAGTCCTCTACTGCACTCCTTTCAGCAGCGCACTTCGACGCGATTGTCGTGCCTGTCAATGACCATCACCCTTCAAAGCTCATGGGCTCAAGTTTACAGTCATCGAATGGGGCAAGCAGAGAAACACTACCTAGCTCCATAgttgatgttgttttcattacattCTGCCTTAAAAAAGGAGCACATATGTTATCTTTTCTatccagttttatttgtatatacaggaacatttcttgtcttttttaagTTCTGTACTAAACCATGctcaaattgaaaaacaaacaaagtctGAGCACACTGCCCTGCTTCCCAGATGTTTCCTCccaagaacatttttatttttacatgaatatCTTACAATAATACCAGTGgcaataattgaaaatgtttctccTCTTTTGTTGTAGAACTCTAGGCTCTGATGATGCAATGGGGGAAAACATTCGGTTTTCATTGCCTAAGATATTGGCCTaccttctaaatgttacagactttctttactgtatatatacattttctgtcttaAAAAGTGGCCTTCTTCATGTCCTAGAGAAGCAGAAGACatcaaaaatacagtaagatgTGAAACATGACGGTGTCACACGTGTGCAATAAGGACAAACCTTCTTGTAattttatataagaaaaaatagatttatgtattctatattttaaatattttgcataattGTCATATCTGCAACAATATGTACTGGTAGTCTTGTATATCTGTTTGATGAGTTTCAGTCACAGCTGAATTGCTGCAGTAGATTTGTCAGGTACTTCACAAAAATCAACATACTGATGCTCAGATTAGTATTTATGCATGTCAAAGAAAGGCCAGACTGAAATAGGCtgactatatatatagtcagcctatttcatatatatatatatatatatatatatatgtcatgtttttaaaagaatatatatgaAAGAAAATCCTATGCATTCAAAGAGTGGAAAAGTAATGGCAGTGTTTGGATTGTCAGCAGTAGAACTATATGGTACAGCTAAAGTAAATATGACAACTGCTCTGAGCTTTGAGACTGCAGTACAAACAGCAGCTGTGGCTTCTAATATCAACAGATATCCCGCCAGaatcttttttatgtttattaaaataataataataaaaactatctaaataaaatataatacaatttaaatagcTCCTTGACACATCAGGATTGCAATAAAATTTAGATTTATCTTGGAAGGCTTACAAGAGAGAAAACACTCTCAAGGCCAGAGAGTATTAATAGATGCTTTTTGGCCTTCCTTGCAGAATTGACCTGCTCTTTAgattaaataatgcaatgaaaCCCTGTGATTAAAAAGAACACATTGATTCCGAAAACTGAATGTGTTAGGACTAGCTGTCAAAACAAACCTTAAAGTCCTTGGGAAAGTTACAGATAATGTTACAATAAGTTTCCTGAAAATACAATTACCTACACTATTATAAAGTTtaatataattactattattactattgtgtAACAACAGAAATTCACCTCTGTCCTTTAAAaccattgcatttaaataaacagtatgGCTCAGTGTgcaaacatcaaaataataccGCATATCACCGGTACATTCACTTTATGTGGTGTGACTCATGAAATGGACCTGGCCAGAGACTGAGAATGAAACATTTACAGTTGTTTCTAGAGcacatcaaaaatacatttcaaaacccATAACAATCTGAATCCAAGGGACTGCTGCTTACCAACCTTCACTGTAATCCTATTAAATCCTTTCGTATTGCTTAATAATTTCCTGAACAAAACTGTCTTTTAAAACCTAACTGTAAAGCTCAGCTTTATGGTTCAGCATGAGTTTATTTTGACATTCAATTAATTCCAGGTTTTAGGTGTCTAATTCTCTGTGGTATTAGTCAgctcattttaatttacttataactggaaaaaaaaaaaaaagtttatctAAAGAACCAAAAACtggttttcaaacaaaacaacagataaATGGCTCTCATCCTGAAATACTCCACAGGTCACTCCCCTCGAGGCTATTGCAGTGTATCACGAGTATTTATGAGTCCACAGGCAACACATGATGGAAAACAAGCCAAGTGTAATTCGCAGCAAATGTTACTGCAGttccattaaaaagaaaaaacaaactgcaatgtctaattttattttattaaccttaaaacagaaataaagcagCTTGTAATTATTCACCAATCAACCAGTTTATGTTTTGCCGTTTTTAACACATACCATCAAATCTTTGTCTTGATTTaacagagaagaagaaaaagaactTGTCTATGTAGAGGTATAAACTATACAGAAACAGTCAACCATGGTATATTCCCCAGGCTGGAAACAATacagcaaaaatatatttttgcttctGTAAGTTTTTGGTGCTATTTGAAAAGACTAAATATGTTATGAGAATTTCACAAATTCTGGTGCTTCCTGTTCTGCAGAAATCTACTTTGAAAAAGTAGAGATTGTAATGAGTTACAATCTCACATTTCGAGAGTTGTATCAGGCAGCCTACAACAATTCATAGTGGACTTGAACCTAGTGAAACTAAAGCACAATTTCAACATCTAGTTCCTCTTAATGTTGTCTTTAAaaagggtggggggagggggtaagATACTTGAGCAGCTCTGTCAaggtatatttaattaatcacattaGCTTTTGCTACAGaaatatttgccttttttaattactctgtaaatgtttttgaacACATACCTTCAGTTCAGATTTTCTGCAGGGTTGTGAGGGACCACCAGaagaatgtgtgttttaaatttcactttcattttttttatctttatctgTAAGCAATCTGAATTAAATATCTGCAGGGCATTGGAAATAGCTTAAAATGCCTAAtaagaatgtttatttataattgtattgtgtaacatatttttacacaatgtaaatatttcaattgTATGATACCATTCATatcacaacctttatactgcatatttcaatagtttttgatttcttcaataaataatagGTTTACAAATATCACAATAAAGGTGATGTATAAAATACTGCTGCTTTATTCACAATTTTGATGAGTGGGGATAATGTGATGtaagtaaaagaaacaaaatgggattaatatttcaaacgcaaaatcaatttcaaaatgtatttctttattcatcTGAAAAGCAGAAAGTACTTTATTTGTCAGTCTATATTACAGTTTGTTTACTACATGTATAGACACATACATATCTGAGTTTTTAAACATCAATGAGTTTTCAACCCAAAAAGAGGTATTACAAATTCC
>TU129466
ggggggggggggggggtaagATACTTGAGCAGCTCTGTCAaggtatatttaattaatcacattaGCTTTTGCTACAGaaatatttgccttttttaattactctgtaaatgtttttgaacACATACCTTCAGTTCAGATTTTCTGCAGGGTTGTGAGGGACCACCAGaagaatgtgtgttttaaatttcactttcattttttttatctttatctgTAAGCAATCTGAATTAAATATCTGCAGGGCATTGGAAATAGCTTAAAATGCCTAAtaagaatgtttatttataattgtattgtgtaacatatttttacacaatgtaaatatttcaattgTATGATACCATTCATatcacaacctttatactgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010994 True 4259 mRNA 0.37 4 7088282 7103508
TU129466 False 368 lncRNA 0.32 2 7071433 7103189

Neighbor

gene id symbol gene type direction distance location
AMCG00010993 NA coding upstream 48510 7004083 ~ 7022923 (+)
AMCG00010991 nkain1,LOC106570599,LOC107593567 coding upstream 190159 6871823 ~ 6881274 (+)
AMCG00010989 snrnp40,LOC107593559,LOC106588762 coding upstream 288577 6775564 ~ 6782856 (+)
AMCG00010986 fabp3,LOC108426441,LOC105892250,LOC107669374 coding upstream 309310 6754924 ~ 6762123 (+)
AMCG00010981 NA coding upstream 561471 6493616 ~ 6509962 (+)
AMCG00010995 NA coding downstream 3777 7107285 ~ 7110941 (+)
AMCG00010996 ppp1r8a,LOC105012537,LOC108441741,LOC105903676,LOC108272406 coding downstream 41231 7144739 ~ 7148896 (+)
AMCG00010998 NA coding downstream 53982 7157490 ~ 7165268 (+)
AMCG00011001 med18,LOC106605104 coding downstream 86713 7190221 ~ 7199316 (+)
AMCG00011000 NA coding downstream 99470 7202978 ~ 7203892 (+)
G103599 NA non-coding upstream 109242 6961986 ~ 6962191 (+)
G103567 ppce,LOC107688393,LOC106923076,LOC103154994,LOC107592053,LOC107706142,LOC107654745,LOC106588491 non-coding upstream 144186 6907102 ~ 6927247 (+)
G103541 NA non-coding upstream 434245 6636963 ~ 6637188 (+)
G103540 NA non-coding upstream 441443 6628488 ~ 6629990 (+)
G103538 NA non-coding upstream 443995 6623485 ~ 6627438 (+)
G103670 NA non-coding downstream 205097 7308605 ~ 7309609 (+)
G103684 NA non-coding downstream 270167 7373675 ~ 7384727 (+)
G103688 NA non-coding downstream 286494 7390002 ~ 7452292 (+)
G103678 NA non-coding downstream 292120 7395628 ~ 7398120 (+)
G103698 NA non-coding downstream 353253 7456761 ~ 7461153 (+)
AMCG00010990 pum1 other upstream 150502 6892397 ~ 6920931 (+)
G103542 NA other upstream 428805 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 675949 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 2429030 4634472 ~ 4642403 (+)
G103078 NA other upstream 2987847 4049938 ~ 4083586 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 1444855 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 2426966 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 3100109 10203617 ~ 10271863 (+)
G104273 NA other downstream 3715180 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 4540509 11644017 ~ 11651021 (+)

Expression


Co-expression Network