AMCG00011006


Basic Information

Item Value
gene id AMCG00011006
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7365242 ~ 7390566 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011006
GAAACTTCTCTGTAAATGTTTGACAAGCAGGAAGCGGGGCTGCTGTTTCTCTTGGCTAATGCaggatttttcctttaatgtacTGTGAGTTTTGAGCTGACTTTCTGTCAAGGATAAAGTTGGACTAtccacaaaaagaaagaaaacagaaggaaCAAAAATACCAGGCATGgAGGTCCTGGTTCTGATTGACTTCACGGGCAACGGGAAGGATGAGCTTTGCATACAGGCCGGGGACATCATTAAAAACACCAGGAAATCATCGGAGGACGGCTGGCTGGAAGGGGAGCTGAGTGGGAAAACGGGACTTTTTCCAATTAGCTTTGTCAAGATAGAAGATGGCTGGTGGCTTGGTTGCAAGAATGGAAAAATGGGGGTATTCCCATCCAACTTTGTCAAAGAAATCACCAGCACTTCTAAAGATGCCAAGTCAAATGATGGAAAAACAAGACCCAAGCTTTCAGACGCAGCCTTCAATAAAGAGGAATGCTGTCAGGTTCTGTTTGACTTCCAGAGCAGTGCTGCCGACGAGTTAGACCTAAAGAAAGGGGATATTGTTACAGTAATCAGTAAGGAGACGGAGGATGAGGGCTGGTGGGAGGGGGAGCTCAAAGGGAAATGTGGCTTCTTTCCTGATAACTTTGTGATGGTGATCCCGTCTCAGCCGCTGGGGCCTGGGAGCAGTAACTGTCCTCCGGTTCGCAAAGCATCAGAAAAAGGCGCAGATGAAAAGAACGACACGAAAGATCTCAGAAGTGACCCTCCTTCTAAAGTCCAGCTCCCAGGCATCAGGAAAGTCCCCCCCCCTGTGAAGAACAAACCTAACAAAATCACCCCCGGCAGGTCAAATGGAGAACTGCCCCCCTTGTCACCAAAACCAGGTGAAgataaaacaaaagagaaagATGGCGAAGAGTTCGATGGCATTGACGTGTCCATCGATAAACTGACTCATCCCACTGCCAACAGAGCGAAACCCCCTGCCAGGAGACCTCCTTCAAATCTGAATGCTGGTCACTCTgaacataaacagaaaaatgaaGTTGATGAAATGCATGCTCCTAAGCTCCCACCCCTCCAAAAGGCTGTTGAAAATCAATCCAGCGTCCCCTCAGCAGCAAAGAATGAGCTGCACTCCCAGTTACCCAAGGTGTCCCCTTTGAAGCCGATCCCGCTGACGGGAATGCATGAAAGCAAACCCAAAGCCGAGGCCGGCAAGGAGCAGAAGAGCTCTGTGGATGAGCTGAGAGCCGAGATCAGAGAGTTCAGCATGGCGCTGGAGCTGCTGAAGTTACAGCATGTGAAAGACGTAGAAGAACTAAAGCAAGAGCTGAGTGAAGAGAGATCCAAACGCACAGCACTTCAGGAAGAAGTGCAACTTCTAAAGAAATCTTCACATCACCAGTAAAACTGGATTGTTTCTTCATCTTCAACATTTTTGAACGGGGTAGAAGCTTGCTGCCTTTCACTGATTGTTCACAGAGTTTATGAATGAACTTATTTTAATACCGAAATGTTAACTGAGATCAACTTATATACTTAATATACTTATACACTGGACAAATACCACAGTGTAGAGCAATGCTGAAAGCAATGCAGTTTTTATTGATAGGTTCCATACATTGTCCTttacacaataatgtatttgttacttGGTCTTTTTGACTCTCTATATAAGATTTCAAAAACACCAATCCATCTTTCTATTCACTGTTACCACTGGGTGTTGTTAGTGAAAACAAGATATAATGCAGAACATGGTTTACCATTTGCAGTTCAAAAACTGTTTGATTTACAGTtagtataaattatatatgtttctAATGTCAGATCATATTGGTTTAAGTTGGATAGTATTTGCGTGATAAGAGGTGAGAAGTCTTTGTGTTAAATGAGTGGATTTACATAATTCTGGGGAAAGCTTTGGCCTACCTGTGAATGCAGCTGTGTTTTATGAATGAGACCCAGTAGGCCTTTAAAGAGACTGTTATCGTCAATGAGGcctcagcagcagcaacagctgAAATGTGTTACAAGTGGCCTGAACTGCTGTTTCTCTGAGGGCAATGGGATTTAAACTTGGTACttcatctgtgtttattttattctatttttatatatattgaaaagcaTTCCgctgtgtgaagaaaaacatctgTTACTAACAGTACAATCTAATGggatgatttttctttctttcctcattTTGACGAATGGTTAAAGAACAAACCGGGTGTATGTGTGCACAGTTTGATGCAGTTTTTGCCGTTCGTCTCGACCGCGGTGTGTTCTTTGACAGAATGTGAAAAAGGCCACGGCTCAGTCTGTGTTTTGTCCGACCTAAAGTAGAGGTCACCAGCCATGAGCCCAGAGAGTCATGGTCCGGCAGATACTATAGGCAATCCTTAAGCTTAACTTAATTTTTCAATGGCTGACTTAATCAAATGATCTGCTAAAGTGCTCAAAATGAAACAACTCCACATCTCATGAAACATAGTATTTTACAGAGACCTATATAAACCAGCCTGAATGTGGCTCTCCGGGATCAGCTTTCCGGTAAAGTGACCCTGAAACCGCTGAGGATGACCTGGCCGATGCACAACTTTCAGTGTCTTTTAATGGATACtttgcaacaacaacacacaaatacaatacataaatgtactgctgtctgtacatttataaataaactaaacaaacctaAACAGTATCTATTGGTTTCCTGCTGCTGTATCTGACTGCCAAAGGCTTCCTCTTATTGCAATTGACTGGAAGCAGTCAACCCTGTACAATAATGAGTGTCTTACTGAAGGAAGTGCGCCTTTCTATATTTACTGAATTTGGTCATCAACCTCAgattaaaacttttttaatgaaagttctctctttttttatgggggggggggggcactagTGGTT

Function

GO: NA

KEGG:

id description
K23715 SH3D21; SH3 domain-containing protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011006 True 2919 mRNA 0.43 14 7365242 7390566

Neighbor

gene id symbol gene type direction distance location
AMCG00011003 NA coding downstream 55821 7308639 ~ 7309421 (-)
AMCG00010997 NA coding downstream 238876 7113635 ~ 7126366 (-)
AMCG00010992 ppce,LOC107654745,LOC107710331,LOC105909065,LOC107602379 coding downstream 427016 6925770 ~ 6938226 (-)
AMCG00010987 NA coding downstream 589736 6764826 ~ 6775506 (-)
AMCG00010985 NA coding downstream 752490 6594655 ~ 6612752 (-)
AMCG00011005 NA coding upstream 2406 7392972 ~ 7408696 (-)
AMCG00011009 NA coding upstream 60503 7451069 ~ 7507166 (-)
AMCG00011008 NA coding upstream 138891 7529457 ~ 7551615 (-)
AMCG00011012 fndc5b,fndc5 coding upstream 241499 7632065 ~ 7647012 (-)
AMCG00011013 NA coding upstream 342857 7733423 ~ 7742566 (-)
G103666 NA non-coding downstream 131928 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 175659 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 193437 7115984 ~ 7171805 (-)
G103556 NA non-coding downstream 603103 6755293 ~ 6762139 (-)
G103539 NA non-coding downstream 737790 6624081 ~ 6627452 (-)
G103794 NA non-coding upstream 386442 7777008 ~ 7779941 (-)
G103859 NA non-coding upstream 665915 8056481 ~ 8056683 (-)
G103893 NA non-coding upstream 777129 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 950797 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 952018 8342584 ~ 8342818 (-)
AMCG00010988 NA other downstream 720519 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 1390935 5965133 ~ 5974307 (-)
G103395 NA other downstream 1616678 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2039818 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 2224733 5134053 ~ 5140509 (-)
G103832 NA other upstream 547571 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 1428985 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1831702 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 2210811 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 2350567 9741133 ~ 9743785 (-)

Expression


Co-expression Network