AMCG00011009


Basic Information

Item Value
gene id AMCG00011009
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7451069 ~ 7507166 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011009
ACGAATTGGGGACTATTTCACAGTGTCCTTAAAGCACTGCGCATTACCAAGGCTCATAATAAATGCACCCCCACCCCTTATGATTGTATAATGAGCTGCACAGATGACAAGTTCAGTCTCTGGACCGGTTTCATGTACGCCCAGAGCGAACTGGAGGAGGCTGTCCGTCCTGTGGAACGGAAGAAGAGGAGCGCTTCTAACTGGCCTGCTTCAGGGTCGGCCGGCCCCTACTGTGCAGCGTTTATCTGCTTTTATTCCATTAAACACGTGCTGCACAAGAGACCCCCAGTGCTCCAGGCTCATGGTTTAATCCAGACGACCCATAGCTGGGTTGGCTTCTCCCACACATCTGAGCTGCTGGTGCAGAAGGCCCGCTGCTGTGGGCCCCCCACGGTGGTGCTGCCATATGCCCCTGAAGTGACCCCCAAGGAAGAGGTGAAGAGCCCACCGAAGGGAGAGCCATCACCAGCCACCCCTGGCATGAGCGTCAGTCCCCGGCCCAAACAAGATGGCATGAAAGCAGAGGACAGACAGAAGCTAGCCAAGGAGAGGCGGGAGGAGCGTGCCAAGTACCTGGAGCAACGTAGCATGACGAAAGCTGCCAAGAAGACACAATggctggagaaggaggagaaagcCAGACAACTGCGTGAGAAGCAGCTAGAGGATCGCAGAAAGAAGCTGGAAGAGCAGAGACTCAAGGCAGAAAAGCGAAGAGCTGCGCTGGAGGAGAGACAGCGGATCAAGCTGGAGAAAAACAAGGAGAGATATGAAGCTGCCATCCAGAGATCAGCGAAGAAGACATGGGCAGAAATCCGCAAACAGAGATGGTCCTGGGCAGGAGGCCTCAGCCAGAATTCACAGAGAGAAGGTACAGGCAGATGTTCGGTGTCAGCAGTCAACCTTCCTAAACATGTGGATTCCGTTATAAACAAGAGGCTGTCCAAGTCCTCTGCCACCTTGTGGAATTCTCCGAACAGAACCCGCAGTCTGCAGCTCAGCCCCTGGGAGAGTAGCATTGTGGACCGCCTGATGACGCCCACCCTCTCTTTCCTGGCGCGGAGCCGCAGTGCCGCCACACTGCTGGGGAACGGCAAGGATGCCCTCTCGCCCCTGTGCCCTCGCTCGTCCTCAGCCAGCCCCCTCACACCCTGCAACAGCCACCGAGCTCACCACCACCGCTGCTCCGATCGCTGGAAAGTGTCCGCCAGCACCCCAGACATCACCCAGCGCCGACGCCGGGACTCCACACCGatggagaagaagaagaaagagaagaaagacaaagagcGAGAAAACGAAAAAGAGAAGAACGCcctcacaaaagaaaaagtgttgAAGAAGAGGCAGTCTTTGCCCAGTATTAAACACCGAACAGAGTCCAGTCCATTGCCCAAGAACCGTCCCTCGTCCCCGGCACCCCCGAAGGCACGGCCTGCCTCCCCGAACCCAGCAGTGGCCCCCAAACCCCCCTCCCCGCGTGCCCCCCCAACTGTACCTAAGCTCCGCACTAAGAGATCGAAGACCCCGGCCCGGGCAGAGCAGCGCACAGCCTCGCCCATTGCTGTGGACAAGATGAGAGAGGCGAGGCGGCCAGCTACGCCGGACGAGAACAGAGGCTCAACCATTGTCCCAGCCATTATTGTGTCCTCGGCTCCGGCAACGCCCCCTTCTTTGGCTGCACCAATCACAGCTCCCACCCCCTCTTCCTGCTCTGCCTCAGCCCCAGAGCAAACCCCGCCTGCGGCTGTCCCCGCGAGTGCTCCTGCCAGCAAGCCCATGGCCGGCACCAACGACCCCGAGGAGGCTGCCAGGATCCTGGCCGAGAAACGCAAGCAGGCCCGGGAGCAGAGGGAGCGAGAGGAGCAGGAGAAAAGAGaacaggaggagagagacagGGTCCTGCGAGAGGAGCGGGCAGTGAGGCAGGCGGAGGAGAGGAAGCAGCGTGAGGCCGAGGCCCAGAGGCTGGCAGAGGAGCGCAAGCAGCAGGAGGAGGTGCAGCGGCAGGAGGACGAGGCCCGGCAGCAGAGGGAGGCAGAGGAGAAGGCCCGGGCCGAACAGGAGGAGAATGAGCGGCTCCAGAGACAGAGAGACGAGGCGGAGGCGAAGGCCcgagaggaggcagagaggcAGCGCCTGGAGCGAGAGAAACACTTCCAGAAGGAAGAGCAGGAGCGTCTGGAGAGGAAGAAGCGCTTAGAAGAGATTATGAAAAGAACACGAAAAACAGATGGTGGAGACAAGAAAGATGCAAAGTCTTCCTCTCCGGCACAAGTAAACGGCAAAGATGCCAAACCGGATCCTGAGAGCAAGAAGGGGTCAACTAACTCCCAGCAAGCCCTGGGCTCCATGATGTCCAACAAGGAGGTAGAGGAGGCCCAATCACAAAGCAGCATGAAAGACAGGCCAGGGGAACAGACCACTCTGAGCCTCCCAGTGAAGGAATCCCTTCCCGTGGTGAACGGCGTGCAGACCGCCAAACACGAAAATGGCCTGTCTGCCAAGGGGGAGGGCACAGACTTTGAGGAGATCATTGAGCTGGCCAATCACAGCGGCAGCAACAACGGAGGGCGGGAAAAATCAGAGAGTGAGCCAATCCTGGCCTTTGAGTCGGAGGAACCCTTCCTGAAAAAGGCCAGTTCCCTGAAGACCCAACACaagtCCTCTGAGAAGGAGATGATTGGAGATGTTCACCACTGGATGGACAGACTTAATGACCACAGCACAGCTTAGAACGAGAACTGTGCCAAATAAAGATTGACTGCTTTTTAgattaatagaaataaaaacaagacaaacaaaatatacacatgaaaaaaaaggaagaaaacataaCAGCAATGACTTCATCGAAGAAATAATTAACTCTGGAAAcaagcaagagaaaaaaaaaatgaaaatgtttattcacATCTTCTTCACTTGCGATTATGGTGCAACAGTGTTACATTGTACTTTTGAAATGAGTCTCTCACGCAGTTTTTAACATGCACCTTAAAAGACTGACAGCTTAAttcattgtaggaatacagacCACAACACCAtatttgacattattattattattattattattattattattattattattattatgagttgGACAAAGAAGTGTGTTggttatttttgtctttaataatttagttatttaacttGAAAAATGTAAGCAACTACTGGGTACAGTGTATgtgaataatgtaaataaacctCACAGTGTTGCACCAGGTTGCGTTGGTGGGCCCTGTGTAATAAAGGTTTATAAAAGGGAGCCCAGAGTCTGCTTTGATTATAGGGGAGTACATCTCAAGCGAGTGTGCTTTCAGAAAGACCTTTTGTTGAACTTTTTCTGGAAAGGAGTGGGGGTGGgataagtatttatttgaaagctgGAAAATAAGTTGATCTCATGACTGTTATCTGTAATTTGCTCTCCTCGGGATAACAACTATCATCATTTGGAGCCTGGTGAAACATTCTTTTTCTACAGTTGGCATCTCTGGAACGACGCACGAAAAGCCTGCGAATCCTGACGATGAGTTTGTAAATGCAGGCCAAGCCTTTGGTCACAAACTGTGCTGATATCCACACAGACATCCTTGTGGATGGCCTTCTGCATTTTCATGTGGTAGATTAATTTCTTGGGGGCCTGCCAAATTCAAAGTCAGATGGAAATCGGAAAATATGACTAACAAGCTACAAAGATATCATAATGAAActttcatcttttttatttttatatgtaaagtTTGCATAGAAGGTTAAAGAGTTGTTTGAGACTGTAGtagaatttatgttttttgcatCCCAGTTTCTGTTCTGTTGCAATTAAAGCTGCTTATGACGGTTGATA

Function

GO: NA

KEGG:

id description
K16806 MAP7D1; MAP7 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011009 True 3856 mRNA 0.51 21 7451069 7507166

Neighbor

gene id symbol gene type direction distance location
AMCG00011005 NA coding downstream 42373 7392972 ~ 7408696 (-)
AMCG00011006 NA coding downstream 60503 7365242 ~ 7390566 (-)
AMCG00011003 NA coding downstream 141648 7308639 ~ 7309421 (-)
AMCG00010997 NA coding downstream 324703 7113635 ~ 7126366 (-)
AMCG00010992 ppce,LOC107654745,LOC107710331,LOC105909065,LOC107602379 coding downstream 512843 6925770 ~ 6938226 (-)
AMCG00011008 NA coding upstream 22291 7529457 ~ 7551615 (-)
AMCG00011012 fndc5b,fndc5 coding upstream 124899 7632065 ~ 7647012 (-)
AMCG00011013 NA coding upstream 226257 7733423 ~ 7742566 (-)
AMCG00011022 hdac1 coding upstream 478115 7985281 ~ 7994619 (-)
AMCG00011023 lck,LOC100136288,LOC100136287 coding upstream 490372 7997538 ~ 8026488 (-)
G103666 NA non-coding downstream 217755 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 261486 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 279264 7115984 ~ 7171805 (-)
G103556 NA non-coding downstream 688930 6755293 ~ 6762139 (-)
G103539 NA non-coding downstream 823617 6624081 ~ 6627452 (-)
G103794 NA non-coding upstream 269842 7777008 ~ 7779941 (-)
G103859 NA non-coding upstream 549315 8056481 ~ 8056683 (-)
G103893 NA non-coding upstream 660529 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 834197 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 835418 8342584 ~ 8342818 (-)
AMCG00010988 NA other downstream 806346 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 1476762 5965133 ~ 5974307 (-)
G103395 NA other downstream 1702505 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2125645 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 2310560 5134053 ~ 5140509 (-)
G103832 NA other upstream 430971 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 1312385 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1715102 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 2094211 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 2233967 9741133 ~ 9743785 (-)

Expression


Co-expression Network