AMCG00011013


Basic Information

Item Value
gene id AMCG00011013
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7733423 ~ 7742566 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011013
ATGGAGGAAAGAAGACAGCTGCCCCAGTCACTTGAAGAAAGCAACCTGGCCAAAGGGCTATTCTTGAGAGAATCCATCGCTGAAGACATAACAAAGCCGAGCAACGCCATGCCGGCCGTGCTGCACCTCAGGACCCTGCACCGGTACAGCGTGAACCTGCGCGACCCCAGAGCGGCCCGGGCGGCGGGCAGGGAGCTGCTGGGCAGGGCGCTCTTTGATCGGAGTCTGCTGAGGCAGCTGGAGGACTGTGGCTGGCTCAACTGGTGCAAGCATGCCACCACCCTGGCGCCTCTGAAGAACGGGGGGAAAGGCAATAGCCTGCTGGACGCTGTTTCTCTGTACATGTGGGGGGTCCGGGACACTGACCTGGTGCTACGAACTGCTCTCTATAACACTATGCACCAAAATAGTCATGCTGACCTTCATATAGCAGGACACCGATGGCAGTCACTGGGAGGACACAGCGGTCACTATACTGCATGTAGGATGCCGATGTCCAACGAAGAATGGAAGGCGATTGTGAAGGTGGCAGATCCCAGATCAGAAGTTGAACCCCCCCCCATCATTTCAAACCAAGACATCTATCTCTTTGTCTTAGCCAACATTATCCGAAGGCCAATTATAGTGTTAGGGGGAAGCACAGAGGAAGCAATTGATGCTTCCTCCAATACCCCTGCCGGACCTGCTGGGATTTATCTGCCCCTCCTCTGGGACTCGGAGAAATGTTACGGATTTCCTGTTGTTCTGGGATGTGTGTATCCATTCTGCTGTTTCACGCCACTGCTCAGTAACAGCCCCTCAGCGCCCGAAATTGAAGCACTGCCCCTGGTAATAGACACTAAGCACAGAGTGAAGGAGCTGCCAGTACATTTCCTCCCAGAGCCTGACCAGAGCACCAAACAGCAATCTCTTAGAAAGTACCTGCATCTCAGTGACGTGTTTTTTGGAGACAGCAGTATCAGTGTCGCCAGGCTGGAGAGTCGTAACTTACCAGAAAACCTCAACTTAGTCCAGGACTATTTTAAGTTGGTGAACTATGTGTGTGCTCAGCTCAGTCATGAAATGCAGGGAGCTCAGGATATCTGCAGGGAGCAGGAAAACCAGGCATCCTCAACATGCTTCTCCATCACCAAAGACAAGTGTGCCACAGAGCACTGTCTGTACTTCGCCTCCAAGTACACCTGGCCATACTGCCACGAGTGTCGGGAGGCCTCCCACGGCCGAGCCCTGCCTCCGAAGCCGCCTTCTGCAAAACCCGGACACAGGGAGGGATGGAAGGACACGAGAGAGTACAGCTCGGGCAGCTGCTTCTACGGAGACCGACCCGCCAAAGTCCAACTTCCTGCTGGTCCGGCGTCTGCCCCCTCTGCACCTTTCTCCCCCGCACATCCGCCTGAGAGCAGAAGCCAGGGCTCCAGCTCCCAGCCCCAGAGGACTAACCCAAGCCAGGAACGCAAAAGCACCGTCCATTTTGACCCCTGTCAGCCATCGGGTAATGTGTCTCCACAGAGGACCGAGGGcaaagcagtcaggcctgtgccGTTGCATGATGAGCCCTGTGAGGGGACGGAGGCCTTGCTGTGTGGGAGATGCATAGCTTGCAAGAAAGAGACCCGGACCTTTAATGGCCTGTGTTTCAAATGCCTGCAGACAGAAGAGACGTCCAACCCCAGGGAGGAGGCTGAGCCGTCGCTGTCACCGAAAGTTCAGGACACTGGTTCCCAAAGTGAAAGGCAGTTCATGGAGAGGTGCATCACCCCAGGGTGCATGTACTTTGGCACCTTCGAACACAATGGTTACTGCACCTTGTGCTACTTTAACCAGGACAGAGCTCCGGCCTCTCGATCACAGGTCCGCCAGCAGGAGACCCCAGCAGACCCCCCCCCTCAGATCTCCTCCATTCTCCGTAAGATGCCCAAGTGCAGTGCTCCCGGCTGCAACATGCTGGAGACCCCTGGTTTTAACAGCTTCTGTGAAAAGTGTTTCCTGACCCACAACAAAGGCACGCTAGAATCAGAACTGAACTCCGGACTGACTCGAGCAGAGCCGTCTATCCAGAGACAGGCAAAACCAATTGATGGTTACTTCAGGCCCCCGGCCCAAGAGCCCCTGCAGGAGAAGATGAAACTGGCAGCCTGTGTGGAGAGGAGGACAGGCCCCACTGGCCCCACAGGAAACTCCCAGGCTGCGGGAGAACTAGACAGAAGACAGTGCAGAGACCGTGCATGTGTGAACTTTGGCAACACAAGATGTGATGGATACTGCAATCACTGCTATAAAAAGTATCGCAAGTAAGTTCAAACTGTCAGTCAAGGAAAGTAGAAGCCGCCTCACAGCACTTTAATGTCAactgtgtatatagtgtatatgtatatctataaatagttttatttttttaaagctttgtgCACAATTACTTCCCTGTAATAAAGTTTACCCTCCTCAACTTCAGATGCACC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011013 True 2459 mRNA 0.54 8 7733423 7742566

Neighbor

gene id symbol gene type direction distance location
AMCG00011012 fndc5b,fndc5 coding downstream 86411 7632065 ~ 7647012 (-)
AMCG00011008 NA coding downstream 181808 7529457 ~ 7551615 (-)
AMCG00011009 NA coding downstream 226257 7451069 ~ 7507166 (-)
AMCG00011005 NA coding downstream 324727 7392972 ~ 7408696 (-)
AMCG00011006 NA coding downstream 342857 7365242 ~ 7390566 (-)
AMCG00011022 hdac1 coding upstream 242715 7985281 ~ 7994619 (-)
AMCG00011023 lck,LOC100136288,LOC100136287 coding upstream 254972 7997538 ~ 8026488 (-)
AMCG00011021 LOC101067225 coding upstream 288611 8031177 ~ 8037256 (-)
AMCG00011029 eif3i,LOC102790120 coding upstream 318877 8061443 ~ 8065757 (-)
AMCG00011028 NA coding upstream 328280 8070846 ~ 8077484 (-)
G103666 NA non-coding downstream 500109 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 543840 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 561618 7115984 ~ 7171805 (-)
G103556 NA non-coding downstream 971284 6755293 ~ 6762139 (-)
G103539 NA non-coding downstream 1105971 6624081 ~ 6627452 (-)
G103794 NA non-coding upstream 34442 7777008 ~ 7779941 (-)
G103859 NA non-coding upstream 313915 8056481 ~ 8056683 (-)
G103893 NA non-coding upstream 425129 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 598797 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 600018 8342584 ~ 8342818 (-)
AMCG00010988 NA other downstream 1088700 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 1759116 5965133 ~ 5974307 (-)
G103395 NA other downstream 1984859 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2407999 5284330 ~ 5325424 (-)
AMCG00010939 NA other downstream 2592914 5134053 ~ 5140509 (-)
G103832 NA other upstream 195571 7938137 ~ 8027031 (-)
AMCG00011051 NA other upstream 1076985 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1479702 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1858811 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1998567 9741133 ~ 9743785 (-)

Expression


Co-expression Network