Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00011022 |
| gene name | hdac1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030133.1 |
| NCBI id | CM030133.1 |
| chromosome length | 32682731 |
| location | 7985281 ~ 7994619 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| hdac1 | Enables transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within with a positive effect on secondary heart field specification. Acts upstream of or within several processes, including animal organ development; determination of dorsal identity; and nervous system development. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Is expressed in immature eye; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human HDAC1 (histone deacetylase 1). |
| description |
|---|
| histone deacetylase 1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0031017 | exocrine pancreas development | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0048565 | digestive tract development | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0050769 | positive regulation of neurogenesis | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0070932 | histone H3 deacetylation | biological_process |
| GO:0070933 | histone H4 deacetylation | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0021754 | facial nucleus development | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:0048709 | oligodendrocyte differentiation | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0032041 | NAD-dependent histone deacetylase activity (H3-K14 specific) | molecular_function |
| GO:0097372 | NAD-dependent histone deacetylase activity (H3-K18 specific) | molecular_function |
| GO:0046969 | NAD-dependent histone deacetylase activity (H3-K9 specific) | molecular_function |
| GO:0046970 | NAD-dependent histone deacetylase activity (H4-K16 specific) | molecular_function |
| id | description |
|---|---|
| K06067 | HDAC1_2; histone deacetylase 1/2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00011022 | True | 2696 | mRNA | 0.43 | 14 | 7985281 | 7994619 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00011013 | NA | coding | downstream | 242715 | 7733423 ~ 7742566 (-) |
| AMCG00011012 | fndc5b,fndc5 | coding | downstream | 338269 | 7632065 ~ 7647012 (-) |
| AMCG00011008 | NA | coding | downstream | 433666 | 7529457 ~ 7551615 (-) |
| AMCG00011009 | NA | coding | downstream | 478115 | 7451069 ~ 7507166 (-) |
| AMCG00011005 | NA | coding | downstream | 576585 | 7392972 ~ 7408696 (-) |
| AMCG00011023 | lck,LOC100136288,LOC100136287 | coding | upstream | 2919 | 7997538 ~ 8026488 (-) |
| AMCG00011021 | LOC101067225 | coding | upstream | 36558 | 8031177 ~ 8037256 (-) |
| AMCG00011029 | eif3i,LOC102790120 | coding | upstream | 66824 | 8061443 ~ 8065757 (-) |
| AMCG00011028 | NA | coding | upstream | 76227 | 8070846 ~ 8077484 (-) |
| AMCG00011026 | NA | coding | upstream | 83759 | 8078378 ~ 8080975 (-) |
| G103794 | NA | non-coding | downstream | 205340 | 7777008 ~ 7779941 (-) |
| G103666 | NA | non-coding | downstream | 751967 | 7230954 ~ 7233314 (-) |
| G103658 | NA | non-coding | downstream | 795698 | 7189085 ~ 7189583 (-) |
| G103645 | NA | non-coding | downstream | 813476 | 7115984 ~ 7171805 (-) |
| G103556 | NA | non-coding | downstream | 1223142 | 6755293 ~ 6762139 (-) |
| G103859 | NA | non-coding | upstream | 61862 | 8056481 ~ 8056683 (-) |
| G103893 | NA | non-coding | upstream | 173076 | 8167695 ~ 8167924 (-) |
| G103900 | NA | non-coding | upstream | 346744 | 8341363 ~ 8341588 (-) |
| G103903 | NA | non-coding | upstream | 347965 | 8342584 ~ 8342818 (-) |
| G103929 | NA | non-coding | upstream | 466311 | 8460930 ~ 8462662 (-) |
| AMCG00010988 | NA | other | downstream | 1340558 | 6628570 ~ 6644723 (-) |
| AMCG00010966 | NA | other | downstream | 2010974 | 5965133 ~ 5974307 (-) |
| G103395 | NA | other | downstream | 2236717 | 5704770 ~ 5748564 (-) |
| AMCG00010946 | NA | other | downstream | 2659857 | 5284330 ~ 5325424 (-) |
| AMCG00010939 | NA | other | downstream | 2844772 | 5134053 ~ 5140509 (-) |
| AMCG00011051 | NA | other | upstream | 824932 | 8819551 ~ 8864051 (-) |
| AMCG00011058 | srrm1,LOC107583602,LOC107721297,LOC106579139 | other | upstream | 1227649 | 9222268 ~ 9236228 (-) |
| AMCG00011084 | dlgap3,LOC106933674,LOC106958363 | other | upstream | 1606758 | 9601377 ~ 9619279 (-) |
| AMCG00011086 | NA | other | upstream | 1746514 | 9741133 ~ 9743785 (-) |
| AMCG00011125 | eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 | other | upstream | 3964619 | 11959238 ~ 11971002 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000054_08710955_08718087 | HDAC1, HDAC2.S, HDAC2, HDAC1.S | coding | CI01000054 | null | 8710787 ~ 8718087 (-) |
