AMCG00011025 (LOC107562872,LOC107687085,LOC107576061)


Basic Information

Item Value
gene id AMCG00011025
gene name LOC107562872,LOC107687085,LOC107576061
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8090961 ~ 8099615 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011025
GTTTCTCCACACTTACATAACCGTTTACTATTCCTATCTCTAACCTTTCTTTCCCGTAAGCAATTTGTGATGTAACAATCCTtgaaagtttaatttgaaaatcaatATACGCCATATGCTTAGTATTTACCAATTCATAAATACACAGCGAATAGTTCTGAGAACTCCCTCCTCTCTGTCAGTCACTGCAGTCCTTTATATTTATCCACAGCATTTTCATGATAGGACCTTGAACGTCTGGGAGTTGCTACACTGTCCAATTGTTCTCCACTGCTGTAGATGGATTGGAGCAGCAGGTGCCGTGATGAAGAAACAGGACAGCGAGGGCCAGGAACAGCAGAGCGGAGTTATTGAGGCTCAGACCTGCAAGGAGGAGGCCGGCCTGGGGGAGAGTAGGGCTCCTGAGGGTACCAAGAGTCAGGAGCCTGCGGGCAATTCCCAGCCCAGCACTCTGCCTCCAGATGTCCCAGCCAAAAACGATGCAGAGGACGCGTCCGGTGAGGCGAGCGGCAGTGATGTGTCGGAGGAGCTGAGCCGGCAGCTGGAGGACATCCTGAACACCTACTGCCAGGAGGACAGCGCGGAGGACAGGCCGCAGCCAGAGCCGCCTCGCAATGGAGAGCCCGAGCCCGAGATCGACACTCTGGAGGTCAACGGCATCGCAGACAAGGAGGATGTCAAAGTGGAGGAACCCAAACTGAATGGAGACATCACGGACAAAGACCAGAAGAAGCcccaggagaagaaaaaagtcaaGGGTCTCGgGAAGGAGATCACACTGCTGATGCAGACGTTGAACACCCTGAGCACACCGGAGGAGAAGCTGGCTGCTCTCTGCAAGAAATACGCAGAGCTGCTGGAGGAGCACAGGAACTCGCAGAAGCAGATGAGAGTCCTGCAGAAGAAGCAGAACCAGCTTATTCAGGAGAAGGACCACCTGAGGAACGAGCACAGCAAAGCCATCCTGGCGCGCAGCAAGCTGGAGAGCCTTTGCCGAGAACTGCAGAGGCACAACCGCACGCTGAAGGAGGACGGCATGCAGCGCGCCCGcgtggaggaggagaagaggaaggaggTGACGTCACACTTCCAGGTGACCCTGAATGACATCCAGGTGCAGATGGAGCAGCACAACGAGCGCAACGCCAGCCTGCGGCAGGAGAACATGGAGCTGGCGGAGAAGCTGAAGAAGCTGATCGAGCAGTACGAGCTGCGGGAGGAGCACATCGACAAGGTCTTCAAACACAAGGACCTGCAGCAGCAACTGGTTGATGCCAAACTACAGCAAGCCCAGGAGCTCCTGAAGGAGTCGGAGGACCGGCACCAGAGAGAGAAGGACTTTCTCCTAAAGGAGGCTGTGGAGTCCCAGAGGATGTGTGAGCTGATGAAACAGCAGGAGGTTCATCTCAAGCAACAGTTGTCACTGTATACAGAAAAATTTGAAGAGTTTCAAAACACACTTTCCAAAAGTAATGAAGTGTTCACAACGTTTAAACAGGAGATGGAGAAgATGACTAAAAAGATCAAGAAGCTGGAGAAGGAAACCACAATGTACCGCTCGAGGTGGGAGAGCAGCAACAAAGCGCTGTTGGAGATGGCTGAGGAGAAAACCCTCCGTGATAAGGAGTTCGAGAGCCTGCAGGTCAAGGTTTTGCGCCTGGAGAAGCTGTGCCGAGCCCTGCAGATCGAGCGCAACGAGCTGAGCAAGAAGGTTCAGTGCCTGAGCAAGCAAGGGGACACGGGGCCCCAGGGACCGCACACTGACTGCAGCGCCAGCCTCCCAGACCTCTCTGACACAGAGACTCCTCCCGTGCCCTCAGAGTCCTGCTCAGAGCTGTGCCACTGTGCCGCAGAGTCGGAGAAAGTGACCGCGGGGGAGGCAGACATGCAGGCCTGCCAGGAATAGTCCCGCATCTCTACACCTCACGCAGTACCCACAGAAAGGGTGTGTGTTCTGGTACAGTGTGATTTAGTTTGGTTTTGGGTGAACGTATTCTCACCAGGGAGGATCATTCTTTCACAGAaacgtattattattttattgttttgtttattatttacacaaacaGTCCCTGCAGAAACCAGCATAATGTTCAAGGAGCTGCCTTTATTGTACAAGCACTGAGATGCACTTAGTGTAATTTTTAGTCACATGTGGCTCCAGTGCAGAattttcatcaaaataaagCCTTAGAAAACATTCTAGAATTTCAGAGGAATTCTTTCCCTGTCCCTGCCCGTTTCCCCAGTTTTGTCATGTCACTTTAGAGGGAGATTGTTTTCTTCAGCTGAATGTTGTGATGacccttttttctgtttgcacaGTGCATAAGCAGAAGGTGTGCCAAGTGCTACTGTCCCTACTATCTATCTGCTGCCTTAACGCGTGTTTGTGCAGAGCTGCAGGGTGTATGTGGTTTGTAGTTCTGTGGAACTTAACTatcaattttttatatatatacacatctgttTAAAAGTTAACTGTTACTAATAATTTGTAGTCCTAACCACGGACAAGGATCTTGCTGAAATTTTACTGTGGAAATAACTAAAGGCTTTTGGATTTGAGGGACAGTAGAACAGCAGAGATGTTTGAATGGGTATTAAAGAGTTTCCATTCTCGATCCGTATATTTTAATGTGCGAGTACCTTACATTGCTCATTCTACCCGAGTTTTGCACCACTCTCTAATTGTAAGCTTCGGCTACAGTGTAAGAATGtattctttcctctttttttttaaatgagatctgTATGTGCAAGAAAACTGACATATACGGACAAGTATATTTCTTTGGGGTtttcctgtattattattattattattattattattattattattatcagagtAGTTCTATAATTAAACCATAAGACCCACAAAATTAGAAGTGTGTACTCCGAGCATCATTACAAAGGAATACAAGCAACATTCCTGATAAAGGAtgcagaaaaaagaaactggaaatctatttgttttccctccctctttcaTTTCAGCATAGCCTGTTGGTAAAATTCTGGAGATGCTTTCCTTCACATTAATGCATCCCCATACGGTTCCTCCCGCGAAGCGTTCTAGAAGTGCCAGGTTTCCACTGACTGCTGTGTGCTTGTGCAGGGCTTTAATGAATTGTACAGGACTTCACCACTGTACCAGTCTGTCATTGACCACCTGACCTTATTAATGCTCAGGCAACTTCGAATGTTCAGTGACCAGTTTTGAATGTGGCATTTTATATGCATTATCACTATTTCTTTGAgatcaaaaaatgtaatgaatatttgtttttgtttttatttgtgtatggaGTGATAATCATTGATAGgttgtattatttcagttaaaaactAATCTAAGCAGGAaaaaggtgttttgtttttttcttaccttggaatttgttgtatttgtttttcacgcTAGACAGTTGCAGCTTGGGCAAAACAAAGGATAGAGAAACCCAGGCCTTTTACTATGCAATCAAATTCACtcattccatttttatttattttttaccttgaaGATTCTTGCTACACAGAAAGGGTATTTACAGTATACGTCACTGCATGTGGATCTTCAGTAATTGCTTCCCCTGCCCAACTGATTTCCAGTATATCTGTAAGCAGCAGTAAATGTCTGTAGTAAATGTATCCAGCTGCCACATGCAGAGACGCAGCACATCTGGAGTAATAGTAggaggttttgttttctaaaatttctcattttcattttttatttttagaatgatTTTGTGGAATGGTTAAACTGGGAAGCTACTCGGATTACAGTGAGTTCTGGCATAGGATATTCCTGGAAATGTGTTAAGGGAGAGGTTGATTCAGTTAGCACTGTTCTGTGTCCAACACGCTGtcttaaagattaaaaaataaatgtgcaggtTGAGAAGTGTAAATAGAGGTGTTATATAGATATAGAGGTATCGTCTGGTTATGAATGAGACACTAATGTTTTTCGCATGAATACATTCGATTGACTAAACAAAACACTCTTATCATGTCCTAGGGGAATATTTTCCATGCGTGTGGATTTGTATTGGGATGAAATCATTGTAGGCTGGTTAAATCTGTGCAGTCCCACAGTTTATGCTGCAGAAACTTCCTATAggttttttacaattttacacgCCCTTAAAGATGGAGTCCTTAATGCACTTTTTACACCGTACTTATGTGTGAGTGACAGTCACTGTATTTTATCTGTTAAGGCCCCACTCTCTTGGctaattttatatttccttcATATAGTCAACACAAGGTCTGTTTAATCGGGTACCAAAGATTGCATCGCACACAtacttttcatgtttgtttttgtgttctgtatgtttttcctttgtcattTTCATACTGTCTACACGTTTCtttaggttaaaaaaataataaaatatttgactTTA

Function

NR:

description
PREDICTED: alpha-taxilin-like, partial

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011025 True 4418 mRNA 0.44 11 8090961 8099615

Neighbor

gene id symbol gene type direction distance location
AMCG00011024 ccdc28b,LOC103357048,LOC102215669,LOC106535222 coding downstream 886 8082418 ~ 8090075 (-)
AMCG00011026 NA coding downstream 9986 8078378 ~ 8080975 (-)
AMCG00011028 NA coding downstream 13477 8070846 ~ 8077484 (-)
AMCG00011029 eif3i,LOC102790120 coding downstream 25204 8061443 ~ 8065757 (-)
AMCG00011021 LOC101067225 coding downstream 53705 8031177 ~ 8037256 (-)
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 9708 8109323 ~ 8120492 (-)
AMCG00011030 tmem39b coding upstream 33414 8133029 ~ 8149161 (-)
AMCG00011031 NA coding upstream 228780 8328395 ~ 8328942 (-)
AMCG00011035 LOC106581236,LOC100380864 coding upstream 265105 8364720 ~ 8380701 (-)
AMCG00011036 zbtb8os,LOC100304789 coding upstream 343700 8443315 ~ 8452241 (-)
G103859 NA non-coding downstream 34278 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 311020 7777008 ~ 7779941 (-)
G103666 NA non-coding downstream 857647 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 901378 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 919156 7115984 ~ 7171805 (-)
G103893 NA non-coding upstream 68080 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 241748 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 242969 8342584 ~ 8342818 (-)
G103929 NA non-coding upstream 361315 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 706855 8806470 ~ 8811022 (-)
G103832 NA other downstream 63930 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1446238 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2116654 5965133 ~ 5974307 (-)
G103395 NA other downstream 2342397 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2765537 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 719936 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1122653 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1501762 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1641518 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3859623 11959238 ~ 11971002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_08695322_08702750 TXLNA coding CI01000054 null 8695322 ~ 8703309 (+)