AMCG00011027 (kpna6,LOC107584279,LOC107745716,LOC107562870)


Basic Information

Item Value
gene id AMCG00011027
gene name kpna6,LOC107584279,LOC107745716,LOC107562870
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8109323 ~ 8120492 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011027
TTAATGGTAAAGAAGGGGAATACAGAAGGCAACCTGATTTGAATGTGTGTTGCAGAAACCACAGCAAGTCCTGCAAAAGATAACTACAGAATGAACCGGTACAAGAACAAAGCTCTGAATCTGGAGGAGATGCgcaggaggagggaggaggaaggcATCCAGCTGAGAAAACAGAAACGAGAACAACAGCTCTTCAAGAGGAGAAACGTGGAGATGATGAATGACGAAGCGGGGGTGTTCGACAGTCCTCTGATGGACTCCTTCGTTAGCTCCACCACCACTGGGGAGGGAGTTATCACGAGAGACATGGTGGAAATGCTATTCTCAGAAGATCCAGAGCTTCAGTTAGCCACAACCCAGAAATTCAGAAAACTGCTGTCAAAAGGTACTTTGTTCGAACACTTGttTGAAGCTGCCTGGGCTTTGACAAACATTGCGTCAGGAACCTCGCAACAGACCAAGATCGTGATTGAGGCGGGGGCAGTGCCCATCTTCATCGAGCTGCTTAATTCAGACTTTGAAGATGTGCAGGAACAGGCTGTGTGGGCTCTAGGGAACATTGCAGGGGACAGCGCGGTGTGCAGAGACTATGTACTAAACTGCAACATCCTTCCACCACTATTAACGTTATTGACAAAGTCCACAAGGCTGACGATGACCCGGAATGCAGTGTGGGCCCTTTCTAACTTGTGCCGGGGAAAGAGCCCAGCCCCAGACTTCGAGAAGGTGTCCCCCTGTCTGCAAGTGCTCTCCAGGCTGCTGTTCAGCAGTGACCCAGACTTGCTAGCAGATGCTTGCTGGGCCCTGTCTTATCTCTCTGATGGACCCAATGAGAAGATCCAGGCTGTGATCGACTCTGGGGTCTGCAGAAGATTGGTGGAGCTCTTAATGCACACAGATTACAAAGTTGCTTCGCCAGCCCTGAGAGCTGTAGGAAACATTGTGACTGGTGACGACATCCAGACACAGGTTGTTCTCAACTGCTCCGCCCTGCCCTGTCTCCTGCACCTCCTCAGCAGCCCAAAAGAGTCCATCCGCAAGGAGGCCTGCTGGACCATCTCCAACATCACCGCAGGAAACAGGGCTCAGATACAGGCTGTGATAGATGCGAACATCTTCCCGGTGCTGATAGACATTCTGCAGAAAGCAGAGTTCCGCACGAGGAAGGAGGCAGCATGGGCCATCACGAATGCCACGTCCGGGGGGACCCCAGAACAGATCAGGTATCTGGTGAACCTGGGCTGCATTAAGCCCTTGTGTGACCTGCTCACGGTCATGGACTCTAAGATCGTCCAGGTGGCATTGAATGGGCTGGAGAACATCCTGCGGCTGGGGGAGCAGGAGGCCAAGCAGAGCGTTTCAGGCCTCAACCCCTACTGCGGCCTAATCGAGGAGGCCTATGGGCTGGACAAGATTGAGTTCCTCCAGAGCCACGAGAACCAAGAGATCTACCAGAAGGCTTTCGACCTCATTGAGCATTACTTCGGAGTGGATGATGACGACGCCAGCCTGGCTCCACAGGTGGATGAGAACCAGCAGCAGTACCTCTTCCCCCAGCAGGAGGCTCCTATGGAGGGCTTCCAGCTATAACTGCCTCCCTGAACAATCGTGAGGAGGAAAAAAACGAGagaaaataatgacaacaaaaaagacataaataatgCGCAAAACACTACGCCGTGCAGCCTGGCCTGGGAGAAACTGCCCCCCCACATAGTTTAATCAGTAAAACGGGGAGATTTGACCTCTCGATGCCACTTTCACCCACTGAGATAAAAGCACTGCGGCACCATGGAGAaattacccccccacacacacacacacaccagtagctcagtttttgttgtttcttttcacaaaggaaggaaaggattttcattttattttttatcttcctCTTTCGTCAGATTTTGTCACAAACCTAtctctaaaagaaaaaaaaactttaagtTGAATATTGAGCTGCTTATTTTCCAGCCCTTGGAATTCTTAGAGTGAAATTGTGCTGCTGAGATTTCTCTTCATGTAGTGAAAAgcaggtggggggggttgtCTAGCACTGTAGGAGTAAGCATTAAAATATGCAGTGAGGGGCTCCTGCCTCCCAGTGCCATATGGGAAAAAGGAAGGATCGGAGGCTAGATTTGAGATTTGGTGTCTGCAGGTtgttcatgtgtttttgttcaggTCTTTTTTTTCCCGTTTTCTCTCAAGTTATATTTTCCTGAAGCCACTAAAAACAacttggtgggggggggatacaaaacacaaaaacaaaaaggcgtTTCAAAAATAGAGATGCAATGAAGCCCggctgcaaaaaataataaaaaaaatcccagaagccaaaatatttttttctgacctTGCTCTTGACTGAGGCAAAATAACATGCGTCCTACAATTGGCACTGTATATCCAAGGCGAATATTTTGCTCTTTTGCTACTgatttaaaaaccttttttttttttttttttttttctttcccaaagTGGCGAAAGActttatttgatttggtttaatatacgcatttctttgttttgtctttttctttgacAGTGTTGGGAG

Function

symbol description
kpna6 Predicted to enable nuclear import signal receptor activity. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Orthologous to human KPNA6 (karyopherin subunit alpha 6).

NR:

description
importin subunit alpha-7

GO: NA

KEGG:

id description
K15042 KPNA5_6; importin subunit alpha-6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011027 True 2569 mRNA 0.48 12 8109323 8120492

Neighbor

gene id symbol gene type direction distance location
AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding downstream 9708 8090961 ~ 8099615 (-)
AMCG00011024 ccdc28b,LOC103357048,LOC102215669,LOC106535222 coding downstream 19248 8082418 ~ 8090075 (-)
AMCG00011026 NA coding downstream 28348 8078378 ~ 8080975 (-)
AMCG00011028 NA coding downstream 31839 8070846 ~ 8077484 (-)
AMCG00011029 eif3i,LOC102790120 coding downstream 43566 8061443 ~ 8065757 (-)
AMCG00011030 tmem39b coding upstream 12537 8133029 ~ 8149161 (-)
AMCG00011031 NA coding upstream 207903 8328395 ~ 8328942 (-)
AMCG00011035 LOC106581236,LOC100380864 coding upstream 244228 8364720 ~ 8380701 (-)
AMCG00011036 zbtb8os,LOC100304789 coding upstream 322823 8443315 ~ 8452241 (-)
AMCG00011034 NA coding upstream 342722 8463214 ~ 8464498 (-)
G103859 NA non-coding downstream 52640 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 329382 7777008 ~ 7779941 (-)
G103666 NA non-coding downstream 876009 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 919740 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 937518 7115984 ~ 7171805 (-)
G103893 NA non-coding upstream 47203 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 220871 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 222092 8342584 ~ 8342818 (-)
G103929 NA non-coding upstream 340438 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 685978 8806470 ~ 8811022 (-)
G103832 NA other downstream 82292 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1464600 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2135016 5965133 ~ 5974307 (-)
G103395 NA other downstream 2360759 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2783899 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 699059 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1101776 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1480885 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1620641 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3838746 11959238 ~ 11971002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014868 kpna6 coding NC_007130.7 CM002903.2 29861859 ~ 29887629 (-)
grasscarp (Ctenopharyngodon idella) CI01000054_08675009_08686170 KPNA6 coding CI01000054 null 8675009 ~ 8686679 (+)