AMCG00011029 (eif3i,LOC102790120)


Basic Information

Item Value
gene id AMCG00011029
gene name eif3i,LOC102790120
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8061443 ~ 8065757 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011029
ATGTCCcaccctctcccctctctctttattAAGAGACCCATTCTCCTGCAAGGCCATGAAAGGTCTATAACACAGATCAAGTACAACCGGGAAGGAGACCTCCTTTTCGATGTGGCTAAAGACACGGTGGTGAATGTGTGGTACTCAGTGAACGGAGAGAGACTGGGCACTTACAATGGGCACACAGGCGCCGTGTGGTGTGTGGATGTAGACTGGGACACCAAAAATGTGTTGACCGGATCTGCAGACAACAGCTGTCGTCTGTGGGACTGTGAGACagggaAACAACTTGCCTTTCTCAAGACCAGCTCTGCTGTCAGGACCTGTGgctttgacttcagtgggaacaTTATCATGTTCTCCACAGACAAGCAGATGGGCTATCAGTGCTTCCTGAACTTCTTTGACCTCCGTGACCCCACCCAGATAGAGGATAACGAGCCCTACATGTCGGTGCCATGCAGTGAGTCCAAGATCACCAGCGCCGTGTGGGGCCCCCTGGGGGAGTTTGTCATCGCCGGGCACGAGAATGGAGAAATCAACCAGTTCAGTGCcaagTCTGGAGAGGTTCTGAAGACAATTAAGGAGCACACCAAGCAGATCAACGACATTCAGTCCTCTGTGGATCTGACCATGTTTGTCACCGCTTCCAAAGACAACACAGCCAAGCTGTTCGACAGCTCGTCGCTAGATCACATCAAAACCTTCAAGACCGAGAGACCTGTCAACTCCGCTGCTATCTCCCCAATGATGGACCACGTGGTGATGGGTGGAGGGCAGGAGGCCATGGAAGTGACCACGACGTCCACCAGGATTGGCAAGTTTGAAGCCAGGTTTTTCCATGCTGCATTTGAGGAGGAGTTCGGCAGAGTAAAGGGTCACTTTGGCCCCATCAACTGTGTGGCTTTCCACCCTGATGGCAAGAGGTTAGAGACGCCTGtagttttcaaaatgcttttttatgtgATGAGGATTACCTGTTAA

Function

symbol description
eif3i Predicted to enable translation initiation factor activity. Acts upstream of or within liver development and sprouting angiogenesis. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex, eIF3m. Is expressed in several structures, including digestive system; endothelial cell; nervous system; otic vesicle; and pectoral fin. Orthologous to human EIF3I (eukaryotic translation initiation factor 3 subunit I).

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit I-like

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03246 EIF3I; translation initiation factor 3 subunit I

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011029 True 984 mRNA 0.51 9 8061443 8065757

Neighbor

gene id symbol gene type direction distance location
AMCG00011021 LOC101067225 coding downstream 24187 8031177 ~ 8037256 (-)
AMCG00011023 lck,LOC100136288,LOC100136287 coding downstream 34955 7997538 ~ 8026488 (-)
AMCG00011022 hdac1 coding downstream 66824 7985281 ~ 7994619 (-)
AMCG00011013 NA coding downstream 318877 7733423 ~ 7742566 (-)
AMCG00011012 fndc5b,fndc5 coding downstream 414431 7632065 ~ 7647012 (-)
AMCG00011028 NA coding upstream 5089 8070846 ~ 8077484 (-)
AMCG00011026 NA coding upstream 12621 8078378 ~ 8080975 (-)
AMCG00011024 ccdc28b,LOC103357048,LOC102215669,LOC106535222 coding upstream 16661 8082418 ~ 8090075 (-)
AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding upstream 25204 8090961 ~ 8099615 (-)
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding upstream 43566 8109323 ~ 8120492 (-)
G103859 NA non-coding downstream 4760 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 281502 7777008 ~ 7779941 (-)
G103666 NA non-coding downstream 828129 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 871860 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 889638 7115984 ~ 7171805 (-)
G103893 NA non-coding upstream 101938 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 275606 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 276827 8342584 ~ 8342818 (-)
G103929 NA non-coding upstream 395173 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 740713 8806470 ~ 8811022 (-)
G103832 NA other downstream 34412 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1416720 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2087136 5965133 ~ 5974307 (-)
G103395 NA other downstream 2312879 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2736019 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 753794 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1156511 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1535620 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1675376 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3893481 11959238 ~ 11971002 (-)

Expression


Co-expression Network