AMCG00011030 (tmem39b)


Basic Information

Item Value
gene id AMCG00011030
gene name tmem39b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8133029 ~ 8149161 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011030
ATGAGGAGTGTTGCATTTCAGCGCCAAATTCGGGCCTCCATCCATCCACCCACCCTCTTAAGCAGGAGGTGTCGGAAATTCACCTCCACTGGGAGCTGGACTGCTTCCAGCCAGATTGGTAACCTGCAGGGACACCACGAAACAGGAGCCTACCTGCTCCCCTGCACAGCGGTGGAGGCTTTTGGCTGTAAGTGGAGTGAAAGGGGACACTTAAGTTTGCCAAAAGCAGGGAGCAGTGGCCTATTCGGGAATGGCAGGCGGAAGGAGAGGGCCAAACCGGACGTCCTACTGCCGATCGCCCCTGAGAGTGGCTCGGGTACAGGGATCTCCAGCCCCCCCCTTGCGGCCCAGACGGTTGTTCCCCTGAAGCACTGCAAGATCCCAGAGCTGGCCATGGACAGCAGCGTCCTGTTCGAGCTGCACCTCTTCTTCTGCCACCTCATTGCGCTGTTCGTCCATTACATCAACATCTACAAGACGGTGTGGTGGTACCCTCCCTCACACCCCCCCTCGCACACCTCGCTGAATTTTCACCTCATTGACTACAACTTGTTGATCTTCACTGTCATCGTGCTGGCTCGCCGGCTGATCGGAGCCATTGTGAAAGAGGCCTCTCAGAGTGGTAAACTATCATTCCCTCAATCCATCTTCCTGGTGACGGTGCGGTTTGCAGTCCTAACCGGGACTGGCTGGAGTCTGTGTCGATCCATGATTTACCTCTTCCGAACGTACTCTGTCTTAAACCTGCTGTTTCTGTGCTACCCATTCGGGATGTACATCCCCTTCTTCCGTCTGAATTGTGATTTTCGGAGGTCCAGCCCGCTCTCCCCCGTCACCAGCATTGGGTCCAAGGAGGGGGGGGTGATGGCCGGTAGGGGGAAGGACTACCTGACTGTGCTGAAGGAGACCTGGAAGCAGCACACCAGCCAGCTGTACGGGGTCGAGGTCATGCCCACACACGCCTGCTGCCTCTCGCCGGACCTCATCCGCAAAGAGGTGGAATACCTGAAGATGGACTTCAACTGGAGGATGAAGGAGGTCCTCGTGAGCTCCATGCTGAGCGCCTACTACGTGGCCTTCGTTCCTGTCTGGTTTGTCAAGAACACGCAGTACTATGACAAGCGCTGGTCGTGTGAGCTCTTCATCCTGGTGTCCGTCAGCACTTCTGTGATCCTGATGCGGCACCTCCTGCCCCCACGCTACTGCGATCTCCTGCACAAAGCTGCTGCCCACCTGGGCTGCTGGCAGAAGGTGGATCCCTCACTCTGCTCCAACGTCCTGCAGCACCTATGGACAGAGGAATACATGTGGCCACAGGGAGTCTTGGTAAAACACAACAAGAACGTCTATAAAGCGACGGGTCACTACAATGTAGCAGTTCCTTCAGATGTGTCGCATTATCGATTCTATttttTCTTCAACAAGCCTTTACGAATATTGAACATCCTCATCATTCTAGAAGGGGCAATGATATTCTACCAGCTATACTCCTTAATATGTTCAGAAAAATGGCACCAAACAATATCACTGGCTTTAATTCTATTCAGTAATTATTATGCTTTCTTCAAATTACTCAGGGACAGGATAGTCCTAGGGAAAGCATATTCCTATTTGTCAAACAGCACCTCTGAccagaaattaaattaagttattgTTTGCCATGGGTTAACTTTCAAATATGCCAGAgagctttgtattttttctacaaatgtgttgttttcttttgttgttgatgttgtttctgttcttatcttccataataataataaaaaaacatatttttgtattcccttAAAGAGAAGACTTCCTTTCTTCCTCAAGCTGTATAAGATGTGTCTATGAATgtaactgtgtgtatgtatcctGAAGGTATTCACAGCACTGGCTGGTACAAGTGTTTTGAATATTTCTTTgcggaaaaataaaaatgatctgaATGAAAAAA

Function

symbol description
tmem39b Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM39B (transmembrane protein 39B).

NR:

description
Transmembrane protein 39B

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011030 True 1945 mRNA 0.50 10 8133029 8149161

Neighbor

gene id symbol gene type direction distance location
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 12537 8109323 ~ 8120492 (-)
AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding downstream 33414 8090961 ~ 8099615 (-)
AMCG00011024 ccdc28b,LOC103357048,LOC102215669,LOC106535222 coding downstream 42954 8082418 ~ 8090075 (-)
AMCG00011026 NA coding downstream 52054 8078378 ~ 8080975 (-)
AMCG00011028 NA coding downstream 55545 8070846 ~ 8077484 (-)
AMCG00011031 NA coding upstream 179234 8328395 ~ 8328942 (-)
AMCG00011035 LOC106581236,LOC100380864 coding upstream 215559 8364720 ~ 8380701 (-)
AMCG00011036 zbtb8os,LOC100304789 coding upstream 294154 8443315 ~ 8452241 (-)
AMCG00011034 NA coding upstream 314053 8463214 ~ 8464498 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding upstream 399672 8548833 ~ 8555531 (-)
G103859 NA non-coding downstream 76346 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 353088 7777008 ~ 7779941 (-)
G103666 NA non-coding downstream 899715 7230954 ~ 7233314 (-)
G103658 NA non-coding downstream 943446 7189085 ~ 7189583 (-)
G103645 NA non-coding downstream 961224 7115984 ~ 7171805 (-)
G103893 NA non-coding upstream 18534 8167695 ~ 8167924 (-)
G103900 NA non-coding upstream 192202 8341363 ~ 8341588 (-)
G103903 NA non-coding upstream 193423 8342584 ~ 8342818 (-)
G103929 NA non-coding upstream 311769 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 657309 8806470 ~ 8811022 (-)
G103832 NA other downstream 105998 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1488306 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2158722 5965133 ~ 5974307 (-)
G103395 NA other downstream 2384465 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 2807605 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 670390 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 1073107 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1452216 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1591972 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3810077 11959238 ~ 11971002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006120 tmem39b coding NC_007124.7 CM002897.2 33268657 ~ 33281310 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_07388341_07401600 NA coding CI01000012 null 7388341 ~ 7401756 (-)