AMCG00011033 (rbbp4,LOC107568807,LOC107584269,LOC105015627,LOC107709266)


Basic Information

Item Value
gene id AMCG00011033
gene name rbbp4,LOC107568807,LOC107584269,LOC105015627,LOC107709266
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8452328 ~ 8460860 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011033
CGCGAAGGAGCTCACTGGCTGGACAAAGAGCTGCtcgtctcttttttttttattttcccgttttgttttctgctgcgGTTTGTGCTCCGATACGGCATCATGGCCGATAAAGAAGCAGCCTTTGATGATGCTGTGGAGGAGAGAGTGATCAATGAAGAATACAAGATCTGGAAGAAGAACACCCCCTTCCTGTATGATCTGGTGATGACCCATGCCTTGGAGTGGCCCAGTCTCACCGCACAGTGGCTGCCCGATGTCACCAGACCTGAGGGGAAGGACTTCAGTGTACACCGCCTGGTCCTCGGCACCCACACATCGGACGAGCAGAACCACCTGGTCATCGCCAGCGTTCAGTTGCCCAATGATGATGCCCAGTTCGACGCCTCTCATTACGACAGTGAGAAAGGAGAGTTCGGTGGTTTTGGCTCTGTGAGCGGGAAGATTGAGATCGAAATTAAGATCAACCACGAAGGAGAGGTGAATCGTGCCCGCTACATGCCCCAGAATCCCTGCATTATCGCTACCAAAACCCCCACCAGTGACGTGTTGGTGTTCGACTACACAAAACATCCCTCCAAACCAGATCCCTCTGGCGAGTGCAATCCAGACCTGCGTCTGAGGGGACACCAGAAGGAGGGCTATGGTCTGTCCTGGAACCCCAATCTGAGCGGATACCTGCTGAGTGCCTCAGACGATCACACCATCTGCTTGTGGGACATCAGTGCCGTTCCCAAGGAGGGCAAGGTGGTGGACGCCAAGACCATCTTCACCGGGCACACAGCTGTGGTGGAGGACGTGTCCTGGCACCTCCTGCATGAGTCACTGTTCGGCTCAGTCGCAGATGACCAGAAACTCATGATctGGGACACCAGGTCCAACAACACGTCCAAGCCCAGTCACGCAGTGGACGCCCACACTGCAGAGGTCAACTGCCTCTCCTTCAACCCCTACAGCGAATTCATCCTGGCCACAGGCTCCGCAGACAAGACTGTTGCTCTGTGGGATCTGCGCAACCTGAAGCTGAAGCTGCACTCGTTTGAGTCTCATAAAGACGAGATTTTCCAGGTTCAGTGGTCTCCTCATAACGAAACTATCCTGGCATCGAGTGGCACAGACAGACGACTCAACGTCTGGGATTTAAGTAAAATCGGAGAGGAGCAGTCCCCAGAGGACGCAGAGGACGGCCCCCCTGAGCTCCTGTTTATCCACGGCGGTCACACAGCCAAGATTTCAGACTTCTCCTGGAACCCCAATGAACCCTGGGTCATCTGCTCCGTCTCAGAAGACAACATTATGCAAGTGTGGCAAATGGCTGAGAACATTTACAATGACGAGGACCCGGAGGGAGCGGCTGATGCAGAAGTGCAAGGTTGAGCACACACTTGCTTTACCTGTCCGGTGTACCGTGAACAGTCTGCACTCTTTTACACACGTGGAGGCGTAcaaagctatttttttttttttggtgacaaCTGTTACACTGGTGTTCAGGCTCACAATGGGTGACACAAGCTAATTTGAAGTATGAGATCTTGAATTCTTTAGGGAACAAAattgccccctccccccacagcttttttaatgtgaatttttaaagcattgggtggtttattttattccttcctGGTTTTAACTAAGATATGGAAACGGACATGATTCGAAGTTTGATACTGTGTTATCTGGCATTTTTATAAGCAATAATGTCTGCTTGTGACATggactaaattacattttcatatggaATTAGCAGTAACAacaattacagaagaaaaataagctaattttatacaatttaaacaaatatagatTGTGcctcttttttatttctctcacaGTCTCCCTCTCCCCTGTTCCAGGTATAGATCTACCAACTGGTTTTCAATTAGgtaattttagtttgtttttgctacTAATACGTAGTCcactctgtgtatgtgtataacgTACCAAATGGGCGTGACttcacttttgtttgttgtgcaCTTAGGGCATAGGATGAGCACAGATcagggttttccttttttgggaGGGGGATACTAACTAAAGGATGAGACGATATGATCTGCGTAGAGTGAttaatggctgttttttttttttttttttttttactgcataaCATTCCTAAGACTGAGGTAAAAAGGTTTTCATATTTATCGGAGGCAGGAGCCCTCTGATGGTGATTGATTAGTTGATTTAATCTCCTCGGCATGTTGGTAAAGGAGCTGTTTTAAGTCTCCTCGTTACTGGCTTAGGGATAGAACAGCCAAaccaagttgttgttttttatgttttttgttttttaaaggaactaAAATAAGCCTTGTGGAAAATATGGCTGTGTGGTTTGCCACGATTTCCGATTTAGTTAGGACTCCCATTTTTCTATTGTATGTACAATGTCGGCACCGTTCTTTTAGGCTCTTTCTTGCTGAGGAGCTCCTTGTTGAATATTAGAAGCAGACTTTTAAAATCTCCACAATTAGCTTTGTACGCAGTGCGATCAGTCCCCCCATCTACCGCCCCCCCCCAGAACTGTTCCTTTTCTTGGTAttgtctttgagattttctgtCTGTTTCCTATTTTGATAGTGACCTCTTGTCTGAGCTTTCTGGACTGTATTCCTCCATTTTTCTTCCTAGCTAAGTGTCTGAAGTACTTCCAAGATGAAaaaatggattttttttttatttttttttgtttcccccccagTTTCCTATTTATTCTGACTTTTCATGACTTGATGAATCTGcgcagttttttttgttttgttttgtttttta

Function

symbol description
rbbp4 Predicted to contribute to ATPase, acting on DNA. Acts upstream of or within fin regeneration. Predicted to be located in nucleus. Predicted to be part of CAF-1 complex and ESC/E(Z) complex. Is expressed in gonad; muscle; nervous system; and pectoral fin. Orthologous to human RBBP4 (RB binding protein 4, chromatin remodeling factor).

NR:

description
PREDICTED: histone-binding protein RBBP4

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0035098 ESC/E(Z) complex cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011033 True 2781 mRNA 0.46 12 8452328 8460860

Neighbor

gene id symbol gene type direction distance location
AMCG00011032 NA coding upstream 18945 8427706 ~ 8433383 (+)
AMCG00011017 NA coding upstream 383964 8066837 ~ 8068364 (+)
AMCG00011020 NA coding upstream 393396 8054877 ~ 8058932 (+)
AMCG00011018 NA coding upstream 401042 8040821 ~ 8051286 (+)
AMCG00011019 NA coding upstream 441110 7995345 ~ 8011218 (+)
AMCG00011037 NA coding downstream 76634 8537494 ~ 8546945 (+)
AMCG00011039 NA coding downstream 98340 8559200 ~ 8567070 (+)
AMCG00011038 NA coding downstream 107853 8568713 ~ 8577634 (+)
AMCG00011043 NA coding downstream 183463 8644323 ~ 8654378 (+)
AMCG00011044 NA coding downstream 208199 8669059 ~ 8693522 (+)
G103868 NA non-coding upstream 343093 8102395 ~ 8109235 (+)
G103873 NA non-coding upstream 351310 8090966 ~ 8101018 (+)
G103850 NA non-coding upstream 382633 8061279 ~ 8069695 (+)
G103823 fam167b,LOC108234384,LOC101067225,LOC105925981 non-coding upstream 417635 8032729 ~ 8034693 (+)
G103800 hdac1,LOC107562876,LOC108272688,LOC107745719,LOC107584281 non-coding upstream 464415 7985084 ~ 7987913 (+)
G103959 NA non-coding downstream 123270 8584130 ~ 8590598 (+)
G103987 NA non-coding downstream 258088 8718948 ~ 8721777 (+)
G104004 NA non-coding downstream 385106 8845966 ~ 8857639 (+)
G104042 LOC106579881 non-coding downstream 486913 8947773 ~ 8948823 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding downstream 507018 8967878 ~ 8970770 (+)
AMCG00010994 NA other upstream 1348820 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 1531397 6892397 ~ 6920931 (+)
G103542 NA other upstream 1809700 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2056844 6387036 ~ 6395484 (+)
AMCG00010922 NA other upstream 3809925 4634472 ~ 4642403 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other downstream 87503 8548363 ~ 8552605 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 1069614 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1742757 10203617 ~ 10271863 (+)
G104273 NA other downstream 2357828 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 3183157 11644017 ~ 11651021 (+)

Expression


Co-expression Network