AMCG00011035 (LOC106581236,LOC100380864)


Basic Information

Item Value
gene id AMCG00011035
gene name LOC106581236,LOC100380864
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8364720 ~ 8380701 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011035
CCGGCGGCTCGGTTCTTGTTCCTCAGTCGGGAGGGTTTTGTTCTCAATCGGTTTCCATTTCTAGCAGCGAGGAAGGAGCGGGAGCCATTACGAGGTTACCAACCGAAACAGCCGGACCCTGTGCCATATTACAGCAGCGCGTACGCAGCCGGCCTCCATTCAGAGCCCGAAAACACGGCGCAACTGGACCAGAACCACCAGCGGCTACATTGTACACATCATTTCTTCCTCCCGAGACTGTACGAGCACCAataaagcacaaaatggagaaCGAGAGCAAGTATCTGCCGGAGTTGCTGGCGGAGAAAGACAGCCTGGATTCGTCGTTCACGCACGCTATGAAACTAGTTTCTGCAGAAATTGAGAGAATTCAGAAAGGTGAACCAAAGAAAGAGGATGAAGACACTTATCTGGACCTGTTCTCACACAAGAATGTCAAACTGAAGGAAAGAGTCCTTATTCCAGTCAAGCAGTACCCAAAGGACATGATGGATGACATTTGTCAGGAGCAGTTTATGGAGATGAGTTACCTCAACGGGGGACAGGAACCGGGTGCCCGAGGcagaggaggaccgcctgtccgAGGCCGTGgagcccccccacctccctcacCTGGTGCCAGGGGGCGAGGGATTCCACAGCGAGGTGGCACTCCTCGAGGGGGTCCAGCAAGGGGTGGTGCTGTGAGGGGAGCTCCCTCTGGCCGAGGGGGTCCCCCAGCTCAGCCCGTGCGGGGTGGCGCCCCAGCGTCTCGTGCCAGACCACCAGCCCCAGGAGTGCAGAGAATGCCCTTACCACACCCTCCTGCACCAGAGCCCTATGAGGAATATTCCTATGAAGACAGCTATGCTGAACCCACTTATGAAGCGTATGAAAGTTACTACAGTCAACCCCAGGCAGACACAGAGTACTATGACTATGGCCATGGGGAGGCCCAGGATGCTTATGAGCCTTATGCCCAGGATGACTGGAATGGGACAAGAGCAAGTCTGAAGCCACCCCCAACAAGGCCTGTTAAAGGAGCATACAGAGAACACCCTTATGGGAGATACTGAAAGGGAAAAGCTCAAGTTTGAATAAGCACATTGCTCACTGACATCGTCTGTCTCCTGTGGCCTGTCGCTTTAAACAACCAGACAAAAgtaataaaacaatacaaataatcgCACAAAACTAGAAGACCATAAAGAATCTGACTGAGTCTTCACTCAGGGATACTGAACAGAAACCCCAAAATGAAGAGGAGCCCCTTTAGTTCCAGGCAGCTAGCAGTGTGGTGGATGGAAGCCGGATAACGTATGAAAGCCTGACCTTGATATGGGAAACGCATAATCATGGTGCACTTGGAGATGTTTTGtgaaccccccaaaaaattgaaattaaaactgcaaactaaatttttttttttttaggaagtTAATGCTGTACAACAGGCAGAGGGGTTACTTTATACAGGGCTTTAACAGTGTATTAGCATTAACTCAAGACAGACATGTTTACTTGGGGTGGAAGACTTGGCTGTTCAGGAGTTCTGAAATGGCTACATGGACCAGTGATCGCCATTCGCTGCCCAAGGACTCAACTGCATTCATGCTCATCTTTAAAGCAAACCCCAGTGATGTCCTTACATCCTTCTGCTCTAGCCAACCAGTTAGCATCCCAGCACTGGCAGAGAAAGTTTTCAACAGAAATCGAGGGTGCCTTCAAAATACCTGCTGGCCCTGTGCCTGACAGTAACTAGTGCTATAATCCCCTTGCCTCCATGAATTCAGGATCCATTTACTCTTGTATACTTTTCCAGCACTATAGTATTTAATGGTCTTTCTCAGGATGAAGTCTATTTCGCTTACCAAgcacttttagttttttactgtGGAGAGAATGGGTAAGATTCATTTCACTGCCAGCTGAAtccagttttgtttctctgctgCGCAGGTCTTGTttaaagaaggagaaaaaaaaaaaaaaaaaaaatattccacagCATTTTGTgctccaaaacaaacaaatggctCATTTTCAGATGTTTGTCACACCTTTGGGTCAATTAATTTTTAGGTTGTTAAGGAACAACCGTATTTCGGCAGTCTGCTGCAAACTTCTGTTGTATAATCTTTTGAGGCATGTAATTTAAGTTAACTctgcataaaataatatgcataatcaAATTTAGAAGGTACACTTTGGCTTAAGAGGGACAGAAATGCAGTAGTTTCCTCTAAGTGgctgactggttttctaaaaatgtagGTTGGAGAATTCATGCCATTTCTATCAATTAATGCGAATGACAAAACTAATTTGTACCTCAAGGTAGTGCTGATTGCAATGCCTAAACGGTACGCTGCTGCATTTCTTTAAGTAGGAATTGTTTGTTAGAGATTTAATAAGTATTAGCTTCCACTGAAGCCACATTAAACAATTGGAAACGGGGCGGCAGTGTGTAAATGAAAAATCCCAAAAGCAGGAAATGGAAAATTCCATTAAATTGCAGGAAGTTTACTGCAATATGATTAATGTAATGCAGAATTGCTGTGTGAGGGATGATGTTTTAATAGTGAGCCAAATTTGTCATTggtttaatacaaaaacaatttggTTGCAGTTGCTGAAGCACTGCACATTAATGCAATTACACATGGTGGATGTGTAGACTACAGAGTAAATAAATAGAGCTATATCGAACAACCAGTTGCTAAATCGGTCTTGACTTCAAAACCATGCAAGATTTATATTGGCTTTTGATCCCACTACAATCAACTTTAAGCACggctattatatatatttatatatattaaaaacactacCCTGAGGATAACTCCATCCAGACTTGCTCTAGACCGGAACAGATCCTCCTCCCTGTACAGTCAAGACAAAGGCTTCCATAGGGCTTGGTATGTAGTATAGGGGTTGGGTAGGTACAATTTGCTTTCAGTGTGGAATTCTGTGCGTCCTCTGGAGTCTGTCTCCTGAGAATTCAGTTCATGTCACTAGTTACTGTCAGGTACTCCCCCAGATCTGTTAGAGAGCTGCCCAGACTGCAGGAGTGTTTGAGAGACGTTCTGTCGTTTGGATACGAGTCCGGCTTGCCAGGAGATGATTGTGTTGCTATGACAAAGATTTTGCTTTGCACAAAATGTCAGATTGAAGTGaagttacaaaaatgtaatttagaacTATGCATATCCTTTCTGGAATACTTAAGTTTTATCCATTAAATCCTgtgcttttcatattttaaatgtctaatatttttatacattataataaaaacaattctttAATAAAGATATCCTGAATACGTTCa

Function

NR:

description
PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011035 True 3310 mRNA 0.44 9 8364720 8380701

Neighbor

gene id symbol gene type direction distance location
AMCG00011031 NA coding downstream 35778 8328395 ~ 8328942 (-)
AMCG00011030 tmem39b coding downstream 215559 8133029 ~ 8149161 (-)
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 244228 8109323 ~ 8120492 (-)
AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding downstream 265105 8090961 ~ 8099615 (-)
AMCG00011024 ccdc28b,LOC103357048,LOC102215669,LOC106535222 coding downstream 274645 8082418 ~ 8090075 (-)
AMCG00011036 zbtb8os,LOC100304789 coding upstream 62614 8443315 ~ 8452241 (-)
AMCG00011034 NA coding upstream 82513 8463214 ~ 8464498 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding upstream 168132 8548833 ~ 8555531 (-)
AMCG00011040 NA coding upstream 197930 8578631 ~ 8582714 (-)
AMCG00011042 NA coding upstream 206892 8587593 ~ 8610252 (-)
G103903 NA non-coding downstream 21902 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 23132 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 196796 8167695 ~ 8167924 (-)
G103859 NA non-coding downstream 308037 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 584779 7777008 ~ 7779941 (-)
G103929 NA non-coding upstream 80229 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 425769 8806470 ~ 8811022 (-)
G104054 NA non-coding upstream 584016 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 584671 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 857090 9237791 ~ 9265487 (-)
G103832 NA other downstream 337689 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1719997 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2390413 5965133 ~ 5974307 (-)
G103395 NA other downstream 2616156 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 3039296 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 438850 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 841567 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1220676 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1360432 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3578537 11959238 ~ 11971002 (-)

Expression


Co-expression Network