AMCG00011036 (zbtb8os,LOC100304789)


Basic Information

Item Value
gene id AMCG00011036
gene name zbtb8os,LOC100304789
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8443315 ~ 8452241 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011036
CGGGAAACAAACTGACGCGCAATTAGGTTCCACAGCGCGTATCCACATATACCTGGAGACCTAATATTTATTCTTACATTTACAAACCTCTTGCAGTGAGTATTATGAAGACAAAATGCGACTGATCTGGAGTAACGTACTGAACACACAAACGAAGCCGGTGCTCGTCTTATCTTAATGTACTGGTGGTTGAATAAACTAGCAAGACCTAGCTAGGTagtcttaaaatgtaaattgatctTTACATGACTTTTTCGAACAGtgatactttatttattttaaaactattgtTAATGCAATTATTAAGAATTGTGTTCgatgtgtatttaattttttatgcaCGGTTACCACTCATACAAATAAAACGTCATGCTCCTATTTTACGAGTCTTACGGGAAGCGGAGGCATTGCTCTTCCTGGTGCGAGACGCGGGCCTGCTGTTGAATTATTAACATTCAGGGAAGTGGcttaaaactaaaatcacatCAGGATGAATGATCGTGAACTGGATCTGACGGAGGAGCAGaagaaactgaaagcaaaatatCCGGCTATCAAGAAGAAATATGAATacCTTGACCACACAGCTGATGTTCAACTGCACTCCTGGGGTGAAACTCTAGAGGAAGCATTTGAGCAGTGCGCCATGGCAATGTTTGGGTACATGACAGACACCGAGACAGTGGAGCCCATTGACACAGTGGAGATAGAATCTGAAGGTGAAGACATGTTGTCCCTTCTTTTCCACTTCCTGGATGACTGGCTATTTAAATTCAGCGCAGATCAGTTCTTCATTCCCAGAgaagTGAAGGTCCTACACATAGACCGAATGCGCTTCCGAATCCGATCCATTGGGTGGGGAGAAGAGTTCAAAATATCTAAGCACCCTCAGGGCACCGAAGTGAAAGCCATCACATATTCAGCGATGCAGATTCACGAAGAGATGAAAAATCCAgaaatatttgttataattgACATCTGACATCAATGTGACTATTGCACAGATGGCCACATGTGAGAAGTGGTCTACTCTGCAATCAGGAGGTAGACTCTGGGACAGTCTCTGCAGTCAGTGCTTGATTAATAGGAAGGGTTTGTAATCCTATGGGTTATGGTTCAAATTATTATACATGAAGTTTTAAAGAAATCTGCAGCTGTTATTAATTTGAATGGTAAAACAAATTAGAAAGGGGTTTGATTGCAGTCAGAGTTTGTATTCAATGTTGGAGTGGGAGGTTGGAAATCAAGCCACAAAAGAAATGTACTGAAGCCAATTTagttaaataatataatgtaattaaaaggcAGGGGGTGTCACAAGACCCACAAGGGTTTTATTTGGGGAAAACACTACAGATGGCGCCTAGCTTTCTGTGCAATTACCAAAGTGAGCACTGCAACAGCAAAGAAGTATAAGAGTATAAGATGTCTGCTCATCAGCATTCAggcatattatttttgtattattattattattattattgaagcaCTTTGAGAtgtgaatagaaaaataagCCCGCCCACACCTTTCTGGCTTTACCCATATTTGAAAAGGTTTggtgattttgtgttttggtttggttttcaaTTGTGAtgtgatgttattattattagcagtagtaacATAATAATCAGaagatgaatacattttatgatttgttgttgtagtaCACAGATTTCTGGAAAGCTACAAGAaaatcttttcatgttttaacttTAGTAGAATCCTTGTCTGCTCGGGTGTAACCTGAAAACTCAGCACTGTCAAAGAACGAACATGAATACACAGTACGCACTGTTCACCTGTACTCCCcatgcagttttgtttgttttgttttgttttgtttccagattttaaaataataaaaagtcatCTGATAAAGACtgattgtgctgtgtgtttattttggattGGCTTTTGTCAGATGACTATGCGGAGCTGGATAATGGAGAAATTAATTGGCTTATTGCTTTGAAACCACCACATACaaagtactgtattgtatttcttatacTGTATTTGAATTGCCTGTGTAAAATTGTTCTGc

Function

symbol description
zbtb8os Predicted to enable metal ion binding activity. Predicted to be involved in tRNA splicing, via endonucleolytic cleavage and ligation. Predicted to act upstream of or within tRNA processing. Predicted to be part of tRNA-splicing ligase complex. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; axis; immature eye; and optic tectum. Orthologous to human ZBTB8OS (zinc finger and BTB domain containing 8 opposite strand).

NR:

description
protein archease

GO: NA

KEGG:

id description
K24956 ZBTB8OS; protein archease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011036 True 2048 mRNA 0.38 7 8443315 8452241

Neighbor

gene id symbol gene type direction distance location
AMCG00011035 LOC106581236,LOC100380864 coding downstream 62614 8364720 ~ 8380701 (-)
AMCG00011031 NA coding downstream 114373 8328395 ~ 8328942 (-)
AMCG00011030 tmem39b coding downstream 294154 8133029 ~ 8149161 (-)
AMCG00011027 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 322823 8109323 ~ 8120492 (-)
AMCG00011025 LOC107562872,LOC107687085,LOC107576061 coding downstream 343700 8090961 ~ 8099615 (-)
AMCG00011034 NA coding upstream 10973 8463214 ~ 8464498 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding upstream 96592 8548833 ~ 8555531 (-)
AMCG00011040 NA coding upstream 126390 8578631 ~ 8582714 (-)
AMCG00011042 NA coding upstream 135352 8587593 ~ 8610252 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding upstream 269143 8721384 ~ 8735583 (-)
G103903 NA non-coding downstream 100497 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 101727 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 275391 8167695 ~ 8167924 (-)
G103859 NA non-coding downstream 386632 8056481 ~ 8056683 (-)
G103794 NA non-coding downstream 663374 7777008 ~ 7779941 (-)
G103929 NA non-coding upstream 8689 8460930 ~ 8462662 (-)
G103999 NA non-coding upstream 354229 8806470 ~ 8811022 (-)
G104054 NA non-coding upstream 512476 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 513131 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 785550 9237791 ~ 9265487 (-)
G103832 NA other downstream 416284 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1798592 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2469008 5965133 ~ 5974307 (-)
G103395 NA other downstream 2694751 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 3117891 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 367310 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 770027 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1149136 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1288892 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3506997 11959238 ~ 11971002 (-)

Expression


Co-expression Network