AMCG00011040


Basic Information

Item Value
gene id AMCG00011040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8578631 ~ 8582714 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011040
cccaggaccaggactgagaaTCACTGATTATACTGTGGTTAAAAACCCACAGCCTACAGAAGGCCCGAGCCTATCAGCCTGATTACAAATGATCTTAATTAGCATTGATTACATGGATGCATACAAGTAGGCCCGTGTTGCGTGATAGCAATCAACGCCTCAGAAAATGCGCTCCGTCCGCTAATTGAATAGAGGCGCCTTCCAACAAAAGGCCGGTTCCCGGGCGAGTCGCtctttatttctgctttacagCTGGTGCATCATTAgctgtttttcaaaaatgaatCTAATATCCTGCGCCTACATTGTGCTGGGGATTGCGTATTACCCTGTTGTCGTCGCGCCGTTAAGCAGATTTTATTCCCTGGAAAGCGACTCCTCGGAAGCGGCCGATGCTGCGGGGGGTTTGATCCGTACGATGCACCGCGGCTCAGGCCCCGCGGCCCAGATCCCGCAGAGCCGAAGCCGCGCCCTTCGCTTCCACATTCCCCCGTACGGCATCCCGTTGGTGAACCCTCCCAATCTTTCGGCGATTAAGCCTGTAATTGAGGGTAGCGATGATCCCAAAGCGGACCTACCAGCGGCTATCCGCCGGCTCATGATTCCCCACATCCCGCAAACCACGCCACCTCCAGCAGACGTCCTTCCAGACGTGTCTGTGAATTGCACCGAGGCGGACATGATCGTGCGGGTCAAAAGGGCCTTCTACGGTTTCGGCGCCAAGCCCGAGCAGCTGAGGCTCGGCTCCCACTGCAAGAGCAACGGCGTGGATCAGGACTCGGGCGACCTGCTCTTCACCTACTCTCTCCTTAAGTGTGATAGCATACGCTCGATGCCCCCTGGATATCTACTTTACAAAGCCATCCTGCATTACGTGCCCAAACAGAGTCGCAGTCCAATTCGGAGATCTCATCTGGTCAACGTCGACATCGAATGCCGTTATAAAAGATACCATCATGTGTATCAGCTTGCTGTACACCCTACCTGGAAGACTCCTTCTTCCAAAGTACTGACAAGTCGAGctggatttgaaattaaaactatGAATGGTAGGTGCATGGTAGACACCAAAACTGAAGGCAGCAACTCCCAGTACGTCTCGCCCAGAACAGATGATACCATCAACTTTTCTGTTGATGCTTTCCAATTTACTGAGAATCCATCTTCTAAGATCATCATTCACTGCAAACTGTTTGTTACAAAAGGAGGTCCCAGCTCTGTTGCCAAGGCCTGCACCTATAACCGgaacacagaaatATGGAAGAATCTTGCACCTGATGATGATGCTCTATGTACTTGTTGTGAAACCACATGTGCAGGTCCAAGATCCAGATCAATTTCTGAAGGCTTTCAGAGCAGTGCTCCACTAGTAGTTACTGGCCAAAAATCCCAAAGCGAGCCTGACGAGGGCAGCCTTTCTTTGGAAACTGAATCCCTGCCCACCTGGGACACTGAGGATGCCATTTGGTTTAAAGCAAAAGGCGTGCAAGCGGACCTGCCTTCTGGAAACTTCACTGCGACTCCTGTGAACGAGTTGGTGGCGTGGGATGAGGAAGGGAAGGAAGGGGACATGAGGGATTCTTCTCTGGAAGAGGATGTGTCCCAGCAAGAGGAAGAGGACAAGTGGGAGGAATTCCAGGGGGATGAACAACTGGACTCTGGCTCTGAAGAATATGGGGATATTGATCAGTTACTCAGTCCTGAATATGATGGTAGGATTGTAGAAAATGGTTCAGCAGCCCAAATGGAAAAAATCTTTCAAGCCAGGGGCAAGTAAAGGagcaagtttttttgttttgttttgtttttcttttctgaagtCAAGATGCCTAGGTTTGCCTGCGGTTTATGTATATATGGCTAAGAACTATTGCTGCTGAAATGTCAAGGTGTTTTTTGCAGGGACTGATCTGGCTCGGTCAGATTCTTGTATCCCTGCCCTTGGTGgtcttgatttttaaaataaaaaaaatgctcatTGGAAATGTTTTGCTCTAATTTGTGGGTATGGGACATCCAACATTAAGTCTAGGTTTCAGATCTATGGACTTGCTGTATGATCCGGGTAGTGCCAAATTCTCGAACTATGGCCTggtttttaaatctgaatttctCCATTGTTTCCCCCACCTTGTTCCGTGGGATGACTTTCCCAGTTCAATATCTGTGAACATCACTCTGCTGTGTGACGGATGCCAATCTATTTTATACCTTTATATGGGCGAAGACGCAATGGAAAACTTATCCCACTACTGTGACGCACACATTCCTCTGTTACTACACCATGGTACAATAAACTATTGCTTATGAGACCAAAACAATGTTTGGGTGTGGTTTCTTACGAAGAATTTCTGTAGTGGAGTTCAAGGTCCTCGTTGCATTCCTTTACCCTGAATGTCATGCCACCAGGAAGCTATGAATTCACTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011040 True 2428 mRNA 0.48 7 8578631 8582714

Neighbor

gene id symbol gene type direction distance location
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding downstream 23100 8548833 ~ 8555531 (-)
AMCG00011034 NA coding downstream 114133 8463214 ~ 8464498 (-)
AMCG00011036 zbtb8os,LOC100304789 coding downstream 126390 8443315 ~ 8452241 (-)
AMCG00011035 LOC106581236,LOC100380864 coding downstream 197930 8364720 ~ 8380701 (-)
AMCG00011031 NA coding downstream 249689 8328395 ~ 8328942 (-)
AMCG00011042 NA coding upstream 4879 8587593 ~ 8610252 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding upstream 138670 8721384 ~ 8735583 (-)
AMCG00011049 ldlrap1,arhb,LOC106579967 coding upstream 283627 8866341 ~ 8886705 (-)
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding upstream 330727 8913441 ~ 8930598 (-)
AMCG00011052 NA coding upstream 358402 8941116 ~ 8952749 (-)
G103929 NA non-coding downstream 115969 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 235813 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 237043 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 410707 8167695 ~ 8167924 (-)
G103859 NA non-coding downstream 521948 8056481 ~ 8056683 (-)
G103999 NA non-coding upstream 223756 8806470 ~ 8811022 (-)
G104054 NA non-coding upstream 382003 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 382658 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 655077 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 827875 9410589 ~ 9412922 (-)
G103832 NA other downstream 551600 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1933908 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2604324 5965133 ~ 5974307 (-)
G103395 NA other downstream 2830067 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 3253207 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 236837 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 639554 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1018663 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1158419 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3376524 11959238 ~ 11971002 (-)

Expression


Co-expression Network