AMCG00011041 (yars,LOC107687080,LOC107724337,LOC107691530)


Basic Information

Item Value
gene id AMCG00011041
gene name yars,LOC107687080,LOC107724337,LOC107691530
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8548833 ~ 8555531 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011041
ATGGGAGAACAGATGAGCCCAGATGAAAAGTACCAGATCATTACCAGAAACCTGCAGGAGGTTCTGGGAGAGGAGAAACTGAAACAGATCCTGAAGGAGAGAGAGCTCAAGGTGTACTGGGGCACTGCCACCACAGGCAAACCTCACGTGGCATACTTTGTGCCCATGTCAAAGATTGCTGACTTCTTAAAGGCAGGGTGTGAGCTTCTGGAGCTCAGGACCAAGTACTACGAGCAGGTCATCAAAGCCATGCTAGAGAGTATCGGAGTGCCTCTGGACAAGCTCAAGTTCATCCGAGGAACTGACTTCCAGCTCAGCAGGGAGTACACTCTGGATGTGTACCGGCTGTCCTCTGTTGTCACCCAGCACGATGCCAAGAAAGCTGGGGCTGAGGTGGTGAAGCAGGTAGAACACCCCCTGTTGAGTGGCCTGCTGTACCCTGGACTACAGGCGCTGGATGAGGAGTATCTAAAGGTGGACGCCCAGTTTGGCGGTGTGGATCAGAGGAAAATCTTCACTCTGGCAGAAAAGTACCTGCCATCCCTGGGCTATACTAAACGCATCCACATGATGAACCCCATGGTGCCAGGGCTGACTGGGGGCAAGATGAGCTCCTCGGAAGAGGAGTCGAAGATCGACCTCCTGGACAGGAAGGAGGACGTGAAGAAGAAGCTGAAGAAGGCGTTCTGTGAGCCGGGGAACGTGGAGAACAACGGCGTCCTGTCCTTCGTCAAGCATGTCCTCTTCCCCCTGCACTCGGAGTTTACCGTGAAAAGAGATGAGAAGTTCGGAGGTGACAAAGTCTATACGGTCATCGAGGATGTGGAGAAGGACTTTGCAGAGGAGCGGATTCACCCTGGTGATCTGAAGGCCTCTGTAGAGGTGGCGTTGAACAAGCTCCTGGATCCCATCAGGAAGAAGTTTGAGAGTCCAGAGCTGAAGAAACTGACCAACTCTGCTTACCCAGCGCCGTCCAAAAAACAAGGGGCAGCGAAAGGAAATCCCCAAAACTCTGAGGAAGAAGCGATCATCCCCTCCAGGCTAGATATCCGAGTTGGGAAGATCATCAGTGTTGACAAGCACCCCGATGCGGAGAGCCTGTATGTGGAGCAGATCGATGTGGGCGAGGAGGCGCCGCGCACCGTGGTGAGTGGGCTGGTGGCCTACTTGCCCGCTGAGCAGCTGCAGGACCGACTGGTGGTGCTGCTCTGCAACCTGAAGCCCCAGAAGATGAGGGGTGTGGAGTCCCAGGCTATGCTGCTCTGTGCGTCCATTGATGGGGAGAGTCGGAGAGTGGAGCCCCTGGACCCCCCCGAGGGCTCGGCGCCGGGGGACCGGGTGTTTGTGGAGGGATACGAGGCCGGCAAGGCAGACAGTGAGCTGAAGCCAAAGAAAAAAGTGTTCGAGAAGCTGCAGGTGGACTTGAAGATTTCAGAGGCCTGTGTGGCTCAGTGGAAGGAGAATAACCTGATGACCAAACTGGGGCAGATCAGCTGTAAAACACTGAAGGGGGGTAACATCAGCTAA

Function

symbol description
yars Predicted to enable tyrosine-tRNA ligase activity. Predicted to be involved in tyrosyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Predicted to be located in cytosol and nuclear body. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate C. Orthologous to human YARS1 (tyrosyl-tRNA synthetase 1).

NR:

description
PREDICTED: tyrosine--tRNA ligase, cytoplasmic isoform X1

GO:

id name namespace
GO:0006437 tyrosyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004831 tyrosine-tRNA ligase activity molecular_function

KEGG:

id description
K01866 YARS, tyrS; tyrosyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011041 True 1527 mRNA 0.55 13 8548833 8555531

Neighbor

gene id symbol gene type direction distance location
AMCG00011034 NA coding downstream 84335 8463214 ~ 8464498 (-)
AMCG00011036 zbtb8os,LOC100304789 coding downstream 96592 8443315 ~ 8452241 (-)
AMCG00011035 LOC106581236,LOC100380864 coding downstream 168132 8364720 ~ 8380701 (-)
AMCG00011031 NA coding downstream 219891 8328395 ~ 8328942 (-)
AMCG00011030 tmem39b coding downstream 399672 8133029 ~ 8149161 (-)
AMCG00011040 NA coding upstream 23100 8578631 ~ 8582714 (-)
AMCG00011042 NA coding upstream 32062 8587593 ~ 8610252 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding upstream 165853 8721384 ~ 8735583 (-)
AMCG00011049 ldlrap1,arhb,LOC106579967 coding upstream 310810 8866341 ~ 8886705 (-)
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding upstream 357910 8913441 ~ 8930598 (-)
G103929 NA non-coding downstream 86171 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 206015 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 207245 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 380909 8167695 ~ 8167924 (-)
G103859 NA non-coding downstream 492150 8056481 ~ 8056683 (-)
G103999 NA non-coding upstream 250939 8806470 ~ 8811022 (-)
G104054 NA non-coding upstream 409186 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 409841 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 682260 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 855058 9410589 ~ 9412922 (-)
G103832 NA other downstream 521802 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 1904110 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2574526 5965133 ~ 5974307 (-)
G103395 NA other downstream 2800269 5704770 ~ 5748564 (-)
AMCG00010946 NA other downstream 3223409 5284330 ~ 5325424 (-)
AMCG00011051 NA other upstream 264020 8819551 ~ 8864051 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 666737 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 1045846 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 1185602 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3403707 11959238 ~ 11971002 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location