AMCG00011052


Basic Information

Item Value
gene id AMCG00011052
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8941116 ~ 8952749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011052
CAACATATCGCGAGATTAGCTGCCTGCGCGCCCCTTAACCCAGATAATGTAGAGCCCTTGTGTTAGTGCAGCGCTTTACTCAGTGACTACTACAGGTACAGGTCCAGGGCTTGACAAGATATAAATGCACGCAATCATGGCAATCCAAGATGTTCTGCCAGCACATTTTGCGTATGTGATTTTAACCTTTTTCTACAGCTGGATCATGCTTTCTTACCTCGGCGTTAAAGTTGGACAAGGACGGAAAAAATACGGCGTTAAGTATCCTACCATGTACAGTGACAAGGAGCAGGTGTTCAACTGCATTCAGAGAGCCCACCAAAACACGCTGGAGGTGTACCCGCAGTGGCTCATCTTCCAGGTCATAGCTGGACTTGCATATCCTgTGGTAGCCTCTGTGCTGGGGGTCATTTGGGTTACCAGCAGGTTTTCCTATGCCTGGGGATACTACACTGGTGGTGCTCGTATCTGGCTTTTCATCGGCTTCATGCTGGCCTTTGGCTCTCTCATAGCCTCTATGTGGATCCTGTTCGGGGGCTTTGTGGTGCCACAGAAGGAAGTGGTATATCCAGGAATTGCAGTTTTCTTCCAAAAtgcctttattttctttggGGGCCTGGTGTTCAAATTCGGTCGCACTGAAGACTTGTGGCAGTAGATGTCTCCTACTTCCCCTACTTCTTACCTTATCCCTCTCTTCTGGTAATTCATACACTTGTACATTTTTGAACACCACCTCTTGACTTTACAAGATTTGGTAACCCATGTTTTCTCTTTATGAAGATGTATAGCACGGGGGGAAAAACAACCTAAAGCAGTCAGTCTAAATTGTCATAAATAAACCAATGGTGCAAACACACTAAGCCCAAAGAGTCGTTTGAATGTGGAACACTAAACATCTGTCATTTGGACAGTGGCCTTTCCATTGTAAACCTAACAGagtagtggaaaaaaaaaaaatctccttcCACAACGTCTCGTTGATTTGTGGGCTGTGCGTATAAAGGCACACTCCAaagttttttaaattcagataaACCACATAGCATCCCTTGCATATTGAAACCAAAACAAGAGTTATCTAAGTGACATTACCCTAGAAAAAGGGATACTTATCCATACATTTTGTGATTGCAACTGTTTACTGCGTTGGCCTGAGCGAGAGAGTTCAGTAAGCGATGTTCCTCCCAGTTCTGTGTGCAGTTTCTTACGCAGTGATGACCAGTGTGTTGCTCTGTCATTTATGTCCTTGCTGGACTGTTCAGTAAGCAACCATAAACAGTGTGTTTAAGCATTAACTAATTATATGCCTGAAATCCCCTTAAACTAGTTAACTTGCTATCGTATTAAAAGGGGTGttaaccttttttaattgtttatttaaggctaaagattatttttcccttccaagaaaaggaaaagttaTTGTCTTCAGTCAGAAAGAGAGGTCTGATCATTCCTCTTTTCTcacaacactgtacaataatTTGAATTTGCTTACACTAAATGGGTTATTCAAATACTATTGTATACATAACTCGTTGCTCTGTTAATAATACTTTTACTTTATACTGACATGGATATTAACTGAAATGATTTGTTTCAGTTCATCATGAAGGATAAAGAATGACatctgaaatgctttttttttgtaatatctACTGTATACAGTAACTATTACCAATCCAAAGAACTGCAAGGAAttctggatttttttctcttcatggcatatttaatgttttttgttttgtttttgtttttttggaacaTTGTGGAATGTCTTTTTATatgaaatgtcattatttcttTTAAGTCTACAATATTGCTTTGATATTTATATGTGgaccttttttggggggaaagaAGCACAATTTCGAAAACTCTGGACTGTCCTGCTTTCATGTTGCAGACTTCCTTTTGTTTGTATGATTTGTTCAGCTTCCATGTTCAGGGTTGAAGTAGTTATGCTATCTAAAGTTGTCTGTCCTGAAAATAGAAATctgacattcaaaatcaatattGCTATTGTTAATAACTGTCAAAAATACATAAGTTACCAGTAATCGGTAATTTACTAATATGGGACAGGTATATAACACATTTCTCTTTTATAAGGTACAGATTGTACACAGACATTATATTTCTGTCTTGTCCATTTGTAAAGACTAATAACAGAAGTGTGAGAAGAGAGTCGAGGTCACAGATTCATAAAGTCATCGTGGTTAGCCTGCTGTTGTTATAACTGAGGAATATCAGGCTGGTGTGAGAGAAAAGTGTTGCACATTTAACAATGATTTAATGCTTTTCAAATGGAATCTGggctttttttacatttgtttcccACAATAATGGTATACTGGGTCTTTTGGAATGTTAACTAgtacctttaaataaaaaagcatatgtATCCTTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0004602 glutathione peroxidase activity molecular_function
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011052 True 2415 mRNA 0.38 6 8941116 8952749

Neighbor

gene id symbol gene type direction distance location
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding downstream 10518 8913441 ~ 8930598 (-)
AMCG00011049 ldlrap1,arhb,LOC106579967 coding downstream 54411 8866341 ~ 8886705 (-)
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding downstream 205533 8721384 ~ 8735583 (-)
AMCG00011042 NA coding downstream 330864 8587593 ~ 8610252 (-)
AMCG00011040 NA coding downstream 358402 8578631 ~ 8582714 (-)
AMCG00011054 NA coding upstream 13068 8965817 ~ 8970772 (-)
AMCG00011057 clic4 coding upstream 234961 9187710 ~ 9200667 (-)
AMCG00011059 NA coding upstream 286612 9239361 ~ 9249868 (-)
AMCG00011060 rcan3,LOC104955544 coding upstream 301384 9254133 ~ 9260814 (-)
AMCG00011061 NA coding upstream 347248 9299997 ~ 9309271 (-)
G103999 NA non-coding downstream 130094 8806470 ~ 8811022 (-)
G103929 NA non-coding downstream 478454 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 598298 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 599528 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 773192 8167695 ~ 8167924 (-)
G104054 NA non-coding upstream 11968 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 12623 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 285042 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 457840 9410589 ~ 9412922 (-)
G104272 NA non-coding upstream 1770841 10723590 ~ 10723956 (-)
AMCG00011051 NA other downstream 77065 8819551 ~ 8864051 (-)
G103832 NA other downstream 914085 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2296393 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2966809 5965133 ~ 5974307 (-)
G103395 NA other downstream 3192552 5704770 ~ 5748564 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 269519 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 648628 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 788384 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3006489 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 3038080 11990829 ~ 11997786 (-)

Expression


Co-expression Network