AMCG00011056 (runx3,LOC106610817)


Basic Information

Item Value
gene id AMCG00011056
gene name runx3,LOC106610817
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9122397 ~ 9126585 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011056
CGGCAGCAGCAGAGACGTTTcttacaggaaaacaaaacgcACAGACACGACGCGTCCGCACGCAGCGCTCAGCCCGACACATCTGCAGCCGCGGGACGGACCGGACCGgctcacacagagagagaaagagcaagaCCTCTTCCAAACCGTGCTGTGTGCAACTCTGACCCGGTTGTTGTGATGCATATTCCCGTAGACCCGACCACCACCAGAAGGTTCACCCCACCTTCGACGTCCTTCTCTTGCAACAAGATCGGAGACAGCACCGGGCCGATGGGCACTCCCGGCCCGGTGCGGACGCGTCCGGAGACCCGGTCTGTGGTGGAGGTTTTGGCGGACCACGCCGGCGAGCTGGTGCGAACCGACAGCCCCAACTTTCTCTGCTCGGTGTTACCTTCTCACTGGAGATGCAACAAAACTCTGCCCGTGGCTTTTAAGGTGGTGGCGCTGGGTGATGTTCCTGACGGGACGCTGGTGACAGTGATGGCTGGCAACGACGAGAACTACTCTGCGGAGCTGCGCAACGCGTCGGCGGTCATGAAGAACCAGGTGGCCAGATTCAACGACCTACGGTTCGTGGGAAGGAGTGGACGAGGAAAAAGCTTTACCCTGACAATCACAGTCTTCACCAGTCCCCCTCAAGTAGCAACATATCACAGAGCGATTAAAGTGACGGTTGATGGACCAAGAGAACCGAGA

Function

symbol description
runx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cartilage development; embryonic viscerocranium morphogenesis; and hemopoiesis. Predicted to be located in nucleus. Is expressed in several structures, including Rohon-Beard neurons; digestive system; ganglia; oral epithelium; and skeletal element. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); female reproductive organ cancer (multiple); lung non-small cell carcinoma; pancreatic cancer; and urinary bladder cancer. Orthologous to human RUNX3 (RUNX family transcription factor 3).

NR:

description
PREDICTED: runt-related transcription factor 3 isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09280 RUNXA_B; runt-related transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011056 True 699 mRNA 0.58 3 9122397 9126585

Neighbor

gene id symbol gene type direction distance location
AMCG00011053 NA coding upstream 162199 8954206 ~ 8960198 (+)
AMCG00011048 NA coding upstream 183613 8935088 ~ 8938784 (+)
AMCG00011047 NA coding upstream 283897 8828317 ~ 8838500 (+)
AMCG00011045 hpcal4,LOC107691524,LOC107091490,LOC102228321,LOC107562761 coding upstream 316020 8804751 ~ 8806377 (+)
AMCG00011044 NA coding upstream 428875 8669059 ~ 8693522 (+)
AMCG00011055 NA coding downstream 15013 9141598 ~ 9155179 (+)
AMCG00011062 NA coding downstream 166048 9292633 ~ 9297651 (+)
AMCG00011064 NA coding downstream 199744 9326329 ~ 9344413 (+)
AMCG00011074 NA coding downstream 217946 9344531 ~ 9391101 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding downstream 264813 9391398 ~ 9409014 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 151627 8967878 ~ 8970770 (+)
G104042 LOC106579881 non-coding upstream 173574 8947773 ~ 8948823 (+)
G104004 NA non-coding upstream 264758 8845966 ~ 8857639 (+)
G103987 NA non-coding upstream 400620 8718948 ~ 8721777 (+)
G103959 NA non-coding upstream 531799 8584130 ~ 8590598 (+)
G104062 NA non-coding downstream 31736 9158321 ~ 9159219 (+)
G104079 NA non-coding downstream 96600 9223185 ~ 9226178 (+)
G104115 NA non-coding downstream 225788 9352373 ~ 9352587 (+)
G104147 NA non-coding downstream 347589 9474174 ~ 9475843 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding downstream 350982 9477567 ~ 9481674 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 569792 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2018889 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2201466 6892397 ~ 6920931 (+)
G103542 NA other upstream 2479769 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2726913 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 403889 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 1077032 10203617 ~ 10271863 (+)
G104273 NA other downstream 1692103 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2517432 11644017 ~ 11651021 (+)
G104382 NA other downstream 2539613 11666198 ~ 11671340 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_08884283_08892303 NA coding CI01180000 null 8883846 ~ 8892677 (-)