AMCG00011060 (rcan3,LOC104955544)


Basic Information

Item Value
gene id AMCG00011060
gene name rcan3,LOC104955544
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9254133 ~ 9260814 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011060
caggaGAGGTTTGAGGCCCTGTTCCGGATCTACGATGAGCAAGTGGCGTTTCAGATGTTCAAGAGCTTCAGGAGAGTGCGGATAAACTTCTCCACCCCCGAGGCAGCGGCCCGGGCCCGAATAGAGCTGCACGAGTCCGAGTTCAGCGGGAAGAAGCTCAAGCTGTACTTCGCTCAGgtgcAGAATTCGGGGGAGGACACTGACAAATCCTACTTGGCCCCCCCCCAGCCCGTGAAGCAGTTTCTCATCTCCCCCCCAGCCTCTCCCCCCGTGGGCTGGAGTCAGAGTGAGGATGCAACACCGGGCATCAACTACGACCTTCTGTGTGCTGTCGCCAAATTAGGCCCAGGAGAGAAGTATGAGCTGCACGCCGGCACCGAGTCCACCCCGAGCGTGGTGGTGCACGTCTGTGAGAGCGAGaccgaggaagaggaggaggccaAGCCCAAACAGAAGATCATGCAGACGAGACGCCCCGAGGCTCCCCCGAAGCTCATCAACTAAAGCTGTGACTCTCTCGCTTCATTTCAGTTCAGTAACATTGGGAAAGGAGCATGCAGAGGTGGCAAGCCTGTACAGACGGGAGTTTTCATGCACGCACATTTTGTACAGAAAAAGGGGGAACCTGTGTAAGCTGACACGGGGCAGGTGAATCGGAGACGGACTAAACTCGCATCATCTGTTCATTTTAAGCACTGTGGTTTCTCGCTTGCTTTTCTTTTACcgtgttcttttttttgtatgatgattatgattattattcctattgttgttaatgttaatcTTCTGATTCTTTACGTACTCATGAACAAGTATCATTCATGTGATTCCAAATTAAGCAGCGGACCGGGAGTCTTTTTTATCGCCAGTGCTCTGCTTTTCTCAGTCATAGCAGTTGACCGGTCGCATTGCGAAAAACAAACTCTGAGAGGGGACAGATGtgctttacattacatatactCATGTATGTAAAAAAGGAAAGTCAAACTGTTGAAGGCATAGACACAGCTTGCCCTGTTCTTTGGTTGAGGTGTTGGAGTGTTTCAGGGGAAGGATGTTGACTGAATTAACTGTATATTCTCCTCTTTGATACCACATGTAAAAgctaaaaacacacatgcatgctaAAGCAGTCAGGAGCTGATGTGTTTTTTACTTGTCATCGAGACAGAGAAATGGAATGAAGCTTTTGACAAGGCGTATCGTAGCTGTGGTGTCTTAAGGGTCAGAAACGGCAAAACGGAAAGCAAAACTTGTGTTATTCTCCGTGGCAACTTGTGATCGTGATGGCGCTCAACCGTGGACAGTCTTTGATCTGGTTTAAAGCTTGTTTTAAACCCCCATGATGCAAGGGCACGGGTTTGAGAAATACAACTGTATACAGTGTGAACGGAAAGCAAAACGAAACAAAGCTGTGATGTCCAGTCTGCTTACACAAATGGAgtaaccaaaaaacattgtcgTTTTTAAGTTGACTTTTTAATGTGAGGCTGCATTCATCCAGTTACTTTTCTGTGTGAACGTTGTAAGTAGTTagtttttatcttgttttacaGTCCCTGCTTCAAGGTTGGCACAGAATAATTGTAATGTTCCCATAATGCTAAGTGTCAGGCAAAGAATTGCATATCAGGGGCAGTATTGTGAAGTTACAAACGAGAACCATAGCAACATCAAGACTTTTCTATTGTAAATAGCCTAGGTTGTCAGAGAAGATTGAAAGGATATATAAGGATGTTTGCTGTAAAGAGcagtacaattattattgcttCTCTAAAGCTTATCTATTCATTGTGACTGTTCTTTCTGTTTACTAGCTACCAGAGGTCTCGTCATTCACAAGAGTGGGATATCTACtattccctttttaaaaatagattacaaAATAGTTGAAatcatttttgtgttaaaaatgtaatgttttcttacCATTGCCAAAAAGTCTAACCAATTGAAGACATAAAATTATTCAACTGGGCTCATTTCATAGTTTCCTTGATTAAGTTTGGGAAACTTTAGCCTTTCAGAATCCACTCTTGAATAAAATTAACCACGAACATCCACTGAATTTTTTCAAGCAAAAATGTGAATTGCAAATGACACGTTCTTATTTGAAACTCTGCCTATTTGTGGTGGTAATTAGCACCAGACTGACATCTAAAGGGGAAATGTGTgtcaaacatgtatttataaataaccaTGCTTTATCcttttttggtttattatactgtattttatttttaaaatctatatatatactatatttgaATGCAAATTGCATTGCTGTTTTCTATACTCATTGCTATTGATTAGTTGTACCCTaacagtacaaaatataaaagtggcATAATCAAGTACggtatattttacataatccTTTTTTCTCAGGCCTGTGATTATTGTTAGCCTGTATGGCAATGGACaaacatcttgttcctttttctgggcatttattattaaaatatgtgtcgttgagtttattttttgtatatattttaaaattgagcCTAGAGTTCCTACTGCTATCCTCAGCAGAGTCTAACCTGATTTGAGTCAGATTTGAAGTGGAGACATCCAGTTTGGTCCAGAGCATAAAGACGAAACTATGTCACAGTAAAcccaaatgtaaacaaacatgttttgctAGTCTCCCCACATTAATGTTTGATACAGTAAGCTGTAGGAATACTGACTTGTTTTTTAAGAACTCCTGCGTTGACATGTCCTACTGTTTATGGAAGATGACAAAGATGTGTACAAAATGACAACTATGACAAATGCTCTACCTAATTGGGATTTAATATTAatgctattgttattattataatgattattacaaGTCTGCATTATAGCACTTTATTTTGAGGGGGCGTTCTATGGTTTCCATGGAagagcattatttattttgtatttaattaagattGATAATTTTTCTTACTTCTTGCGTACAAACACCTTGTAGCCTTTGCTTTCACCGGCCTAGAAGCGTGAGAATTATGAATTCCAGATTCAGATACCAATATTCAAACCGGTTTCAGAGGGACTGGTGTTGAGAGGGACACGGGCACAAGAAGCTCCTCATGTTCTGGAGGGGATGGCAGGCTTATTCAGATTGAGGGGGGTATTGTAATGATGCCATCAGAAACAATTGTATGactttgtgtgtatttgcacaTATACGTTTTATCTAATGTAAGCTTAACTTCAGAGCCAGTGTAGTGTGTTCAAGTGTAAAACACCTGAGGATGTGTGCTCACATAAGCATTGTCATGTGATGATGTTTTTGTCTAGTAATCTTACTCGTCTGGAGTATGGGTCTTTGAAACTGGGTGCATTTTCTGTCTCaaaactttctttttaaaacatgtatgcaGAGCTTTACATTATGGTGGCCAATGAAATAAGcttggtctgttttttttttgtttgttgtttttaaatcatattatcATTCATGGctttaaaggaaaatgaagGTTGCTTTATTAAAGATTAACCAGAAATTATATAAACGGTGAGAACGGAAAAGCTGCTTTTAGTTTGACTGGATTCGCACTCACAAATCACATGGTGTGTCGAAAATGGACTCAGTTTTATTCTTCTTGGACGTCTATTACAAATCAATAACGTCACTGTTGTActgttttgttgaaatataaatacCGTGTCTTCTTGTACTGTAGTtgttaagagaaaaaaaagtagcaATCAAGCAATAATTTATGGTTATATCTGTACTTACTGTATTGTATGTAATAATTTCCAGGATTGTTTTATCTGACTGTTACttgcttttatttgtgtagaagtatgaatgtaatttgtttcacaTAGAAGTATATAAAGGATTATTCTTAAACATGCTTTCTTTTGTCcgtttcttctttctttccttctccttGTGTGACCTGTCTAGTAGAAAACTGAAAGCAGTTAATATGACACTGTTCAATGTTTTCATCTATAAAAGCTT

Function

symbol description
rcan3 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; otic placode; otic vesicle; paraxial mesoderm; and retina. Orthologous to human RCAN3 (RCAN family member 3).

NR:

description
PREDICTED: calcipressin-3 isoform X3

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17905 RCAN3; calcipression-3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011060 True 3973 mRNA 0.39 3 9254133 9260814

Neighbor

gene id symbol gene type direction distance location
AMCG00011059 NA coding downstream 4265 9239361 ~ 9249868 (-)
AMCG00011057 clic4 coding downstream 53466 9187710 ~ 9200667 (-)
AMCG00011054 NA coding downstream 283361 8965817 ~ 8970772 (-)
AMCG00011052 NA coding downstream 301384 8941116 ~ 8952749 (-)
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding downstream 323535 8913441 ~ 8930598 (-)
AMCG00011061 NA coding upstream 39183 9299997 ~ 9309271 (-)
AMCG00011073 NA coding upstream 154268 9415082 ~ 9423743 (-)
AMCG00011068 NA coding upstream 169772 9430586 ~ 9434597 (-)
AMCG00011069 NA coding upstream 178173 9438987 ~ 9444334 (-)
AMCG00011070 NA coding upstream 195077 9455891 ~ 9460295 (-)
G104055 NA non-coding downstream 288554 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 288852 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 443111 8806470 ~ 8811022 (-)
G103929 NA non-coding downstream 791471 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 911315 8342584 ~ 8342818 (-)
G104126 NA non-coding upstream 149775 9410589 ~ 9412922 (-)
G104272 NA non-coding upstream 1462776 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1685187 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 2155376 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 2159935 11420749 ~ 11426225 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 17905 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 390082 8819551 ~ 8864051 (-)
G103832 NA other downstream 1227102 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2609410 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 3279826 5965133 ~ 5974307 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 340563 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 480319 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2698424 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2730015 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2805681 12066495 ~ 12069079 (-)

Expression


Co-expression Network