AMCG00011064


Basic Information

Item Value
gene id AMCG00011064
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9326329 ~ 9344413 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011064
ATTTTCTCCTCAAGACATGAGGGTTTCACTCTGCTAGCTGTTCACACAAGAAGACTGTTTAAAGGGACCTAATTCTCCTCATTGGAAAGAAGTCATGACCAAGGAGATTGACTTGAGGTCTGTGATGGGTCTACAGAATGATAGTTTAAACTGCCAGCGATACTCCTACCATGACGATTTAGATATTTGGAAGACCTACCCTGAAAACCAGCTGCCAGCTTCCAACAAGAACAGAGTGAAACCAAACAGCGAAGAGGACAACATAAACTTCTATTACAACCAGTGCAACAAGgcCACAAAAGAGCAGAAGATGTTCTCTTCTCACAGATTAAACGGCATGCACGAACCAATCAAGAGCCAGCAGGAGAATAGAGAGATTCAACTGGGGTTGGGAAACATCAACAAGAAGCCCCAGCTGACTTGCTTGGAGCAGGCTCCCCACTGCCTCGTCCGGCAAGCCTCCCACCTCGAGGACTTCCTGATGCCCCCTGCGGAGGCCTACTCTATCTTCGACTCCATACTGCTCCCGCCACAGCAGAAATGGGTGGCGGAGAACAATTTCAAAGAAGCAGCTCAAGAGGGTCTTCCCTGCAACGATTTGTTCGGACAGCAGACCAGTCCAGTTTACTCCGAAACCTACGCAAACTCCCCTTCAGAAAGACACAGgaATGACTTTCAGTACATGTTGGGCACTCCCCAGGCTTCCCAGCACAAGTCCTGTGAGGTCCCTATGGCCTACCTGAACAAGGGCCAGTTCTACCCCATCATACTGAAAGTTACCGGGGCAGACAGCTCTGTGGGGCTCTCGTCCAGTAAAGTCAAGACTGTGGTCATGGCCGTGTTCGAGAATGAGAAGAACGCAGAGACACAGCTGAAGTGTTGGAATCACTGGCATTCGAGGCAGCCGACCGTTAAGCAGAGAGTCATTGATATCGCCGACTACAAAGAAGTCTTCAGCGGTGTGAGCAACGTGGAAGAGGTTGCGTTCAATGCTCTGTCATTCATCTGGAACACCAACGAGGAAGCCAAGGTCTACATTGGGATCAACTGTCTCAGCACAGACTTCTCCTCTCAGAAGGGAGTGAAGGGACTCCCTCTCAACCTTCAGATCGACACCTACGACTGTGGCACTGGAACCAACCGCCTCATCCACAGAGCTGCGTGCCAGATCAAAATCTTCTGCGACAAAGGAGCAGAGAGGAAGATGAGAGATGAAGAGAGGAAGCAGTCAAAAAGGAAAGGCAAAAATGCAGAATCTAGCAACAACAGTTCCAACAGCAAACAGTCAGTGGTGTCGAGTTCGAGCAGCAGTGATTGCACGTATTTCAAGACATTAGAGGACCTCACCACACAACCTGTTCTCTTCATCCCTGAAATCCACTACTCCAACATGCAGAGATGTGGAATGgtACTTCCTGCAACTGTGGAGGAGGCAGAAAGGACTTCACTGAAAAGGAGCTGTCCGCCCTATCCAGATACATACAGTCCGCCTGTGTGTAAGCAACCCAAACGTGAAGAGCAACAAAGAGATTGCTTCTGCCTTACAGTCCTCCTGTACGTCCGCACGGAATCGGAGGAAGTGTTTGATGCCCTTATGCTGAACACCCCCAATCTCAAAGGCCTGAAAGATGCTATTTCAGAGAAGTACGGACTCAGGGAAGAAGCCATTGGAAAAATATACAAGAAATGCAAAAGGGGgaTTTTCGTTAATATGGATGACAACATCATAGAGCACTATACCAATCACTCAGCCTTCCTAATGGAGTTCACCGATGTCATGGGACAGTTCCAGGTCACACTCATGGAATTATAACGGCACCCCCCCCGTGTCAGGATCAGGTTTCCAACCCCTCCCAGCACTGAAACCACAGTGCACAGAAACTTTGCAAGGTTGATGCTAAATTTCAAAACTTTGTAGCACTGCCATGCTGAAGCACATGACCCGACCGACAATTCATAGAACCAACAGCCTGCTACCAATTCAACAGGATGTCATGCGTGTAAATACTGATGGCCCTCTTCAAGGcttctcctgtttttttatatacagtacatataacTTTTTATGAGTATTTTGTAACACCAGAGCAATTATGAGA

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011064 True 2099 mRNA 0.48 17 9326329 9344413

Neighbor

gene id symbol gene type direction distance location
AMCG00011062 NA coding upstream 28678 9292633 ~ 9297651 (+)
AMCG00011055 NA coding upstream 171150 9141598 ~ 9155179 (+)
AMCG00011056 runx3,LOC106610817 coding upstream 199744 9122397 ~ 9126585 (+)
AMCG00011053 NA coding upstream 366131 8954206 ~ 8960198 (+)
AMCG00011048 NA coding upstream 387545 8935088 ~ 8938784 (+)
AMCG00011074 NA coding downstream 118 9344531 ~ 9391101 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding downstream 46985 9391398 ~ 9409014 (+)
AMCG00011066 NA coding downstream 80769 9425182 ~ 9430080 (+)
AMCG00011067 NA coding downstream 90796 9435209 ~ 9439791 (+)
AMCG00011063 NA coding downstream 114921 9459334 ~ 9467512 (+)
G104079 NA non-coding upstream 100151 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 167110 9158321 ~ 9159219 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 355559 8967878 ~ 8970770 (+)
G104042 LOC106579881 non-coding upstream 377506 8947773 ~ 8948823 (+)
G104004 NA non-coding upstream 468690 8845966 ~ 8857639 (+)
G104115 NA non-coding downstream 7960 9352373 ~ 9352587 (+)
G104147 NA non-coding downstream 129761 9474174 ~ 9475843 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding downstream 133154 9477567 ~ 9481674 (+)
G104204 NA non-coding downstream 348731 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 528240 9872653 ~ 9872890 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 773724 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2222821 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2405398 6892397 ~ 6920931 (+)
G103542 NA other upstream 2683701 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 2930845 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 186061 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 859204 10203617 ~ 10271863 (+)
G104273 NA other downstream 1474275 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2299604 11644017 ~ 11651021 (+)
G104382 NA other downstream 2321785 11666198 ~ 11671340 (+)

Expression


Co-expression Network