AMCG00011066


Basic Information

Item Value
gene id AMCG00011066
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9425182 ~ 9430080 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011066
GTCGGGTAGGTACAGAGATTAGTTTCAGCCCAGCAGCGTGATCCAAACGGCCTGCGCGCTGTGGTGCACGGTGGTCAAGATTGCGTTTCAGGTCGGGTTGTTCTCTCAGCTGGTCACGGAGATGGGGTTATTGGCGTTAATCGCCTCACTTTGTATTGTTGCTTTACCTGCACCGATCTCCGCCAAAAGTATCGGCCATCGCAGGGAAAACCCTCCAGAGTCTGCCACTATTCTGCAGAACATATGGCTGGTTAATGCGCCTTTCCGTGAGGACTCGGTGGATGGCTTTGCTGAGCCCGACATTGGAAACCACGCTGCGTATCCGGCGCCCCCTGCAAACCATCGGGCAATGCCCCCTCCCGAGGAACAACAAGTGGTGGTGTGGTGCAGCGGAGACACCATCTCTCTCCGGGTTAAGAAGATGATGAGGGCAGTGGAGCTCAAACGCAAGGAACTGACTTTAGGGTCGGGATGCAAAAGCAATGGGGTTTCTGGAAACGAGTTCTTCTTTACTTATAGTCTGAGCGAGTGTGGGACCAAGCGATCGATGTGCCATGGAAAAGTGGTCTACAGCAACGTCCTTCACTACCTTCCATCTGCAAGTAAAAGTCCTATTCGGAAATCCAGCCCTTTCAATGTGCCTATAAAATGTACTATGAATAGGTTCCCCCAAGATGAAGTGGCTCCCTCCATCAAAGGACACCATTTGAATAAGAACATGCCTGGCTTTACTCTTCGGACCATGCATGaagATTGGATTGGTGAGGCCAACACTAATGTATACTACCGAGGGAAGCCCATCCATTTCCAGGCCACTGCTCAGCTCCTCTCCAGTGAGCAGAGACTCTTCATTCAGTCTTGCTATGCCACATCATTGCCAGATCCAAACTCCAGACCCAGATCTAAAGTAATTGTCAAAAAAGGGTGCATGCCAGAGCAAATCCCCGGGGGCTCTCGGGCTAGGTTTGTTGCACCTAGAACAAAGAACACCATCAACTTTGTGGTCAATGCATTTGGTCTGCAGTCTTCAGAGATCTACATGCACTGTGTCCTGGTAGCAGTTAATAATCGCAAAGTAACGGAAGGTACCAAATCATGCAACTATAACTATGCCAAAAAAAGGCaagctttttctttcccttccctcttgaaaatGTGGGAGGAACTGGATGGTAACCATGCTGCATGCAAGTGCTGCAGGGAACAATGCGCAAGCTCGGGCTTGAAATCCTTACTAAAAGCTTCCAGAGTAAAACTCCGCACTGGGCCTCTCATCATCTTGGCTGACTCTCAGAGTTTTCCAAAAGAGAAGTGGGATCTAAAGCAACCAAAATCTCATAAACATTCCAAAGCTATGAAGTGGTCTTCTTTGCAGGAGACCAAGGTGAAGAATGCCAAGAGAGAATCTCCTAAAGCAAGGAAGGAATACTATGCTTTTGATCCTGTAGTGTCTCCTGAATATGGGATTATCTCTTCCAAAGGGCCTGTTGCTCCTGAGGGCCAAATGGAAGCTCAACCACTTCCCCTGGAGGACTCGGAAGGGTTTCAGGAGGACTGGAGTTGGAATGTTGAAGACTTTGCACCCAAGGATATGGGTAGACCCCAAATCGGCCCCATGGAGCAAGACTGGAATATCCCTTTAGCAGATGGAAACCTTGATGTGATCTTCCTGATGCAAAGTGATGAGTCTCTTGGCAATCAATGGGCTCATGCAGAGCATAGGTTTGGCTCTGTGGAGTGGTTTGAAGGAGAGGAGCCAGTGTCTGAGGCAGCTGCTGAATTGGACTTTGACAGGAGTTTCACTCTGCAGAGCGATGTTTCCAGGGATGTCAAGGTGCCTTTCCTCTCTTTTTCAAAGGAGGAGCCAGTGTTGGTGGGTTGGGATATGGTGGAGATGGATGAGTTTCAAGGCCATGAAAAAGCTAGTGAAGGGAATTGGGATTATCCTTCATCTTCCACAGACCTGCAAAATGAAGTTCCAGGACGCATTGACCTTATTTTTCGGTCTCCTGCCATTGAAATCAATGATTATCCAGCATCCCCTTCTGGACAGCTGACCAGAAACGGGAGAGGGAAGCGACTGGGTAAGAACTTGAGGACAAAACCTACAAGCCATAAAACCAGCAGACCTTTATTCCATGATGTTTTCTCTGAAAACATGTCAAAGCTGAATGCCAAATCGGAATTCTATAACTGGGAAGGCTATTCAGTGAGGCAGAGTGACTGGTTTCTGAATCAAACCCCTCGGCAAGAGAAGAGCCTTCCCCTAAGAAAAGCTGTACTCCAGGAAAGCAAGAACTTAAACTCTGATCCATTGGCCGTCTTCCGTTCCATTTTAAAGCTGGCTGAGTCTCCAGAGAAGACTAGGAGCCTGGAATACAAAGTGGAGAGGGTGGACTTTGATGGGGACAATATTGTCCCCGAGTGGAGGAGTGTTGCTCTTGCCTGGGAACATGAGGCCCAGCCACCAAATCTGAGGGATCTGCTAGGATTATCCAGGGCAGAGTAGGGAGGCATATCCCCttctgtgatttaattgaattttgtaATGTGCGAATGTGgactaaactttttttttttttttttgagtaaCTAATAAAATTTGAAATGGCTTTTGGCTTATGGAATTCATGGGGAGGAACCCAATGTCTTGGTCTTTCCCCACTtgggttttaaatatttgtgctCCAACATTATAAACCCATAATCAACTTCTGATGTTCGACACTACTTTTTGTATAGGGCTAATGTgctccttaaataaataaaaatacaaatctgatctCACAATTTAAGATTCTTAATGGTTAGTATTAACATCGTTGATCCAGCTTGAGTCTTTGAATCTCCCCAATGGCGATATAAGTAGCTGCACCTGACTTGATGGTTAAATATTGGTTTCTCAGGCAGACCAATTTAATAGTTAAAACTATGTTTTAAATGGGGAAACCAGTGCTTAACTTCAGCAATGATGCTCAACACTGACTATGCTTAAAGAAATTGTAAGTGTAGGAGGgatgagtatttatttttattcccctCTCTCTTGGCTGGTTGTGGAATGTGCTTTTAGGAGGTACAGTGGGGTAAGGAAAACATCTGATTCATGACAAAGGTGTCACTGGGAGAACAAGCACACTAGGGCTATCATACTGCTGGATTCCATAAATTGGTCTTAATTTGTACTGATTGCATAGTTTGCTAGATCCCTATCATGGGTACACTTAATGGGTAATTATGCATTTACCGGTTAAGTAGGATCTGTAGTTTAGCTTTGTTAATTTGTCAATATATACCATTTTGGaggattaacttcaattaaacaatgATTGCAATATCCCTTTTGTTTCCTGGAAAGATTTTAGGGTTTTAACTGAAATAGTTAATAAAGCTCACAAACAACCAAAGCATGTAGTTACTCTTAACCCTAGCTGCAGGGGACCCTGTTCTACTTGTATTATACTTACTTtggattttgtattatattcCTGCACTTTTATATTGCTCCTGTAACCTGTAAATTATCCTGGGTCAGGACATTTGCCAAGAAGAAATAAAGTACATGGTTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011066 True 3572 mRNA 0.45 9 9425182 9430080

Neighbor

gene id symbol gene type direction distance location
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding upstream 16168 9391398 ~ 9409014 (+)
AMCG00011074 NA coding upstream 34081 9344531 ~ 9391101 (+)
AMCG00011064 NA coding upstream 80769 9326329 ~ 9344413 (+)
AMCG00011062 NA coding upstream 127531 9292633 ~ 9297651 (+)
AMCG00011055 NA coding upstream 270003 9141598 ~ 9155179 (+)
AMCG00011067 NA coding downstream 5129 9435209 ~ 9439791 (+)
AMCG00011063 NA coding downstream 29254 9459334 ~ 9467512 (+)
AMCG00011075 NA coding downstream 121724 9551804 ~ 9557387 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding downstream 136440 9566520 ~ 9574704 (+)
AMCG00011080 gale,LOC107583591,LOC107721820 coding downstream 145049 9575129 ~ 9581745 (+)
G104115 NA non-coding upstream 72595 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 199004 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 265963 9158321 ~ 9159219 (+)
G104029 syf2,LOC107679146,LOC106610898 non-coding upstream 454412 8967878 ~ 8970770 (+)
G104042 LOC106579881 non-coding upstream 476359 8947773 ~ 8948823 (+)
G104147 NA non-coding downstream 44094 9474174 ~ 9475843 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding downstream 47487 9477567 ~ 9481674 (+)
G104204 NA non-coding downstream 263064 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 442573 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 1125649 10555729 ~ 10617196 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 872577 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2321674 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2504251 6892397 ~ 6920931 (+)
G103542 NA other upstream 2782554 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 3029698 6387036 ~ 6395484 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other downstream 100394 9530474 ~ 9549520 (+)
AMCG00011089 csmd2 other downstream 773537 10203617 ~ 10271863 (+)
G104273 NA other downstream 1388608 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2213937 11644017 ~ 11651021 (+)
G104382 NA other downstream 2236118 11666198 ~ 11671340 (+)

Expression


Co-expression Network