AMCG00011069


Basic Information

Item Value
gene id AMCG00011069
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9438987 ~ 9444334 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011069
ACCGCGCCTCCCGCCACAGAGCAACTTCGGCTCCCGTCAGGACGGCGGTACACACCTGCGCCGACGAAACCAGGACGGGCCGCTTATAGCGCATCTGCGGACGATATCCGCCATCGGATgtttccaaaaaaaaaaaaacagaaaggaaagaaatcaAAGCCAGAATCATGGACTGGAAGACCTTCCAAGCACTTCTCAGCGGAGTCAATAAGTACTCCACTGCGTTTGGCCGCATCTGGCTGTCGGTGGTTTTTGTGTTCCGGGTGATGGTGTATGTGGTGGCAGCCGAGAGGGTATGGGGTGATGATCAGAAGGACTTTGACTGTAACACCAAGCAGCCAGGTTGCGCCAACGTCTGCTATGACTACTTCTTCCCTATCTCCCACATCCGCCTGTGGGCCTTGCAGCTCATCTTTGTGACCTGCCCCTCGTTAATGGTGGTGATGCATGTGGCGTACCGAGACGACCGCGAGCGCAAGTACCAGCTGAAGCACGGCGAGAATGCCAAGCTCTATCAGGACACAGGCAAGAAGCACGGTGGCCTGTGGTGGACCTACCTAATCAGCTTGTTCTTCAAAACTGGCATCGAGATCGCCTTCCTCTACCTCCTGCACCTCATCTACGACAGCTTCTACCTGCCGAGGCTGGTCAAGTGCCAGATCGATCCCTGCCCCAACGTGGTGGACTGCTACATTGGGCGGCCCACCGAGAAGAAGATCTTCACTTACTTCATGGTGGGCGCATCTGCCTTCTGCATCGTGCTCAATATCTGCGAGATCATCTACCTCATCTTCAAGAGGGTTTTTGGCTTCGCCCACAGGATGAGAGGCAGGAACAGGCGCTCCCCTGACCCTCACAACCATGGCGATGAGAAAGACCACGAGTGTGAGTGCAATCTGAAGATGACCCGCACTGATTTCAAACCCAGAGTCAACGAGGAGCTGCGAGCATCTGCACCAAACCTCTCCAGTGCAGCATAGGACCTCCTCTGCCACTTTTCACTTCAAAGACTTGGGTACTACCCACCCCTGCATTCACATGATTGCTCTTACagtaaatacactttaaaaggACAAAGTTTTTTTCCTGTTAGGTCATTGCATTTTTCTCGTCTCAAGTTGGTGCTGCAGTGCAATAGTGCCATTGACTCACAAGACAAGAATCTGCAGAGGTCTAGAGACACTCAAATGGACAATCCAGTGTGGGCTATTCATACTCAAAGGGAGACAGTCCTAGCTAGGTGTGTCTAACAACCAGAACAAAGGAGGATACATTTCAGAGGAGAAGCTTCCAATACCATGAGTTTACAGTAACCAGAACAAaatagaatgtatttaattgtttcctAAACAATGAATTAAACATGCATACTATTTTATATACTTCTATACTTgataaaatcataatatttgATTCCAATGACTAATTAACATTCTAATTTAGCATGTGAACTATAATTCTTTTGGGCTTCgactgtaattattttgataaaaacaattactcatatcagtcagtcagtcctgCGCATCCGCTCTGTTTTAGTACACATTTTCTATTCTGAAAGCTTTGCAAGTATTAACAGATCTTggaaggggaaaacaaatgaGACATCTCTCCATGAATGTCCAGAACAAAAGGAACAACAATAGCTGGACAACCATGGTTGAGCAAAGACAAGCAACGGGTCTGCCTAGAGCACCACGTCAGTACCGAATTGAGCTCCACTGTTTGTCACCTTGactgtacagtttttattacacaatgaCATGGCATTTGACGAACACTGAAGCGAATGGGAGAGGATAACTGGTATGGTGTTGTAGATCATGGAGAAGCAGCGccattgaaaagaaaaggaagactATTGACAATTCCTAATACAGCTAAAGCAGAACTAACCCTGCCTCTGCCAAAGAACAAACTAcaccaatgtatatatattgcatttactGTACTACAATATGATgccacaatgtgtttttaattgtgctcTAGTTCTCTTTTTCATTTAGGGAATGGCTAGGTTTTAGACTAATTCCAAAAATTAGTAAAACCTGATGACTGATTTCTTGACTggcacttaaataataataattaaaatctggaaagttattttatttttaaaaacctttccCACAATTGTGTGGCCTTAATTGTAAAAACCATTTCAGGGAGGGagtaacttatttttttgtacacatTTGTCCATATTGTTTGTACTTTATCAAtgaaaactaataaacaaaacaaaaagtt

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07622 GJB3, CX31; gap junction beta-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011069 True 2256 mRNA 0.44 2 9438987 9444334

Neighbor

gene id symbol gene type direction distance location
AMCG00011068 NA coding downstream 4390 9430586 ~ 9434597 (-)
AMCG00011073 NA coding downstream 15244 9415082 ~ 9423743 (-)
AMCG00011061 NA coding downstream 129716 9299997 ~ 9309271 (-)
AMCG00011060 rcan3,LOC104955544 coding downstream 178173 9254133 ~ 9260814 (-)
AMCG00011059 NA coding downstream 189119 9239361 ~ 9249868 (-)
AMCG00011070 NA coding upstream 11557 9455891 ~ 9460295 (-)
AMCG00011072 ppie coding upstream 24342 9468676 ~ 9473075 (-)
AMCG00011071 pabpc4,LOC107659242 coding upstream 30223 9474557 ~ 9488647 (-)
AMCG00011078 NA coding upstream 45208 9489542 ~ 9499083 (-)
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding upstream 64250 9508584 ~ 9516296 (-)
G104126 NA non-coding downstream 26065 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 173500 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 473408 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 473706 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 627965 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 1279256 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1501667 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1971856 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1976415 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 2066889 11511223 ~ 11593619 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 202759 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 574936 8819551 ~ 8864051 (-)
G103832 NA other downstream 1411956 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2794264 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 3464680 5965133 ~ 5974307 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 157043 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 296799 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2514904 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2546495 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2622161 12066495 ~ 12069079 (-)

Expression


Co-expression Network