AMCG00011076 (zbtb8b,LOC107724281,LOC107584246)


Basic Information

Item Value
gene id AMCG00011076
gene name zbtb8b,LOC107724281,LOC107584246
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9530474 ~ 9549520 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011076
ATGGAGGTGCCGTCATACCAGTCGAAGCTGCTGTGCGAGCTGAACGAGCAGCGCAAGAGGGACTTCTTCTGTGACTGCAGCGTGATCGTGGAGGGGCGGCTCTTCAAGGCCCACCGCAACGTCCTGTTCGCCAGCAGTGGATACTTCCGGGCCCTGCTAGTGCATTACCTTCAGGACAGCGGGCAGCGGCACAGTACCGCCTCCCTGGACATCGTCACCTCCGAGGCCTTCTCCCTCATCCTGGACTTCCTGTACTCTGGCCGGTTGGACCTGCGCAGTGACAACGTCATCGAGGTGATGTCCGCCGCCAGCTACCTGCAGATGACCGATGTGGTCAATTTCTGCAAGACTTATATCCGTTCTTCGCTGGAGATCTGCAaccgggagagggagagggagagggagagggagcgggaaCGGGAACGGGAgcgggagaaggagagggagagggagagggagagagacagggatggACTGGCGGACAGTGGCACTACATCtgcctctgctgctgctgcctccaCCTCCCTGGAGGACAGCACCAACTCCAGCCCAGATGAGCCCAGCCCGGCTGCCCTGCCCACGCCCCTGCCCCCCAGCAGGGACTCTGAGAGCGAGAGCTCCAGAGGAGAGGGGGAGTTCTCCAGCTTCCACCCGGTGGACCTGGCCATCAAAACACCCCTGACTGACAAGGtcaactcctcctcctcctcaggcTTCCTCCTGGGCCTGGTACACCCCAAGACCGAGTTCGACCCCGACGAAGAAGGGGAGGGCTCAACGGGGGGAAAGTACACACCCCTTTTCAATGCCCCACCCACTGATGATGACAAGCCGCACCCCTCCATCCCACCCCCTGGCAGTGAGCCCTCGCCTCTGCAATACGACAACTACCATGTAAAGCAGTTCCTGGAGGTGCTGCTCCGGGGGGGCTCCAACCCCAAGCGCGAGGAACTGGTCCAGCACTTCGCTCAGAGCCTAGGCgggggtgtggtgggggggcgCGGAGGGGGTTCGGAAGAGGGGATGGGTCTGGGGATGCCCTCCATCATGGAGATCCACAGCGACTGGTACGGAGACGATACAGGAGACGGGCTGGTGATTCCTGTGAAGCTGCACAAGTGCCCGTTCTGCCCCTACACGGCCAAGCAGAAAGGAATCCTGAAGAGACACATCCGCTGCCACACGGGCGAGCGGCCCTACCCCTGCGAGACCTGCGGCAAGAGGTTCACCCGCCAGGAGCACCTGCGCAGCCACTCGCTCAGCGTGCACCGGTCCAACTGGCCCATTGTGTGTAAGGGTTGCCGGCGGACGTTCAGCGGGGTGGTCTCCCACGGGCTGAAGCGCTTCGGCCTCTGCGACGGCTGCACCTGCGTCACCACCACCCATGAAGACTCCACGCCCATCAACctcagcagccaatcagagggCGCAGAGCGCAGCGACGGAATGCTCCAGGGAGCTCCTCGGCCCCGGCCCCTAAGAGCCAGAGTCCTGCAGGACCACCCACCTGCCTATGTGGAGCTGTTGAAAGTGCACAGTGGCTGTGCAGAAGCTAACTTGACCGTCACATGCTTAATCCTGACAAACACAACAGCTGACAGCCAAGTGAACAGAACTCACCAGTCTCGAATCTCGGTTTCCAGTGCTGACATGTCCTTCAGCCACCAGAGTCgcctgctgcagcagctggacGAGCAGCGCCGACAGGAACTCTTCTGCGACTGCAGCGTGCTGGTGGAGGGGCGGCTTTTCAAGGCACACCGCAACGTGCTCTTCGCCAGCAGTGGCTACTTCCGCATGCTGCTGTCCCAGGGCGCCCAGGACTACGGGCAGCCAGTCAGCGCCTCCTTTGAGGTCTTCAGCCCAGACACCTTTACCGTCATCTTGGACTTTGTGTACTCGGGCCAGCTGGACCTCACCAGCACCAACGTCATCGAGGTCATGTCGGCCGCCAGCTATCTACAGATGACAGACGTGATCAGCTATTGCAAAGGCTTCATCAAGTCCTCCCTGGACATCAGTGCCAAGGAGGATGACGACCGCTACCTCAGCTTGTCCGAGAGCACGCCCAGGGGAGCCGGGGATGCCCAGGTCTGTTCACCTGGCCACTCGGCCGTGCTGCTCAGAAACCCCAGCCCCTCGCAGCCTGCATCGTGGCGGGTGTACAGCCCTCAGTTGGATTACCAAAAGGAGGCCATTCCTGAAACCGAGCTCCCCAAACACAGCATCTCCCCTCCCGAGCCCCAGCCCCGCCGGCCTGGACGGAGACCCCTGCGTTGTGCAGATCCTGAGCCGCACTCCTCCCCTGGGGGGTACCAGTTCAGCTTGGGGCCAGAGGCGGGTGCTGTGGGTACCGGGAAGAGGAAAGGCTGGACCTCCACGCCCCGCTCCCCTCCAGACCAGAAGGGGGCAACCTCCCGCCCCAAAGCAGAGAAAGCGGACGAGCTTTACGCCACTCTGCCCACCATTGTTGGGGTTGTGGGGCTCTTCAACAAAGACGAGTGCCCAACGATGCGGTTCAAGTGCCCGTTCTGCACCCACACGGTGAAGAGGAAGGCCGACCTGAAGAGACACCTGCGCTGCCACACGGGGGAGCGCCCCTACCCCTGCGAGGCCTGTGCCAAGAGATTCACCCGCCTGGAGCACCTGCGCAGCCATTTCCAGACCATCCACCAGGCCCGGAAGCTGATCTGCAGGAAATGCAAGCGGCAGGTGACGGAACTGAGCGGGCGGGTGGTGTGCGAGGGCACGCGCAGGTACCGCCTCTGCAACGACTGCCTGCTGGAGACGGGCTGCGATGGCGTGGTGATAGACAGCACTGACTCGACCAATAGCATCGGGGCAACATACATGggggaggaggatgaggaaggGGAGAAGAGCTGGTCAATGACGGACGAGGACGAGCTGGCGGAGGACTCGGGGGCAGACCTCATCATCCAGGAAGTGGATGACAGCGACGAAGAGCTGGAGCACAGGGACACAAAGCTCGTGCCTCCAATGGAGATCCAGCGGTTCCTGAGGTGCTCCAGGCTGCAGGTGAAGCTGCTTTTTCTAATTGATGGATTCTGTCGAGCACATGCCTCGGGCTCTTCACAAGGGCAGGCAGCTCTGGGAAACACGTGA
>TU130204
GCGGTGTCGTGTGTCAAGTGATAAGCGTGGCGtttgtgcaagaaaaaaaaggaagttaGGTAGCATCGACAAAGGAAGGCAATCTTCGGTGCGAAGTGACTGCGCAGAGCCACGCAGAGCCACGCCACGCACCGGAGGGGTGAAGATGGAGGTGCCGTCATACCAGTCGAAGCTGCTGTGCGAGCTGAACGAGCAGCGCAAGAGGGACTTCTTCTGTGACTGCAGCGTGATCGTGGAGGGGCGGCTCTTCAAGGCCCACCGCAACGTCCTGTTCGCCAGCAGTGGATACTTCCGGGCCCTGCTAGTGCATTACCTTCAGGACAGCGGGCAGCGGCACAGTACCGCCTCCCTGGACATCGTCACCTCCGAGGCCTTCTCCCTCATCCTGGACTTCCTGTACTCTGGCCGGTTGGACCTGCGCAGTGACAACGTCATCGAGGTGATGTCCGCCGCCAGCTACCTGCAGATGACCGATGTGGTCAATTTCTGCAAGACTTATATCCGTTCTTCGCTGGAGATCTGCAaccg

Function

symbol description
zbtb8b Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB8B (zinc finger and BTB domain containing 8B).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 8B

GO: NA

KEGG:

id description
K10495 ZBTB8; zinc finger and BTB domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011076 True 3126 mRNA 0.62 9 9533032 9549520
TU130204 False 528 TUCP 0.58 2 9530474 9533414

Neighbor

gene id symbol gene type direction distance location
AMCG00011063 NA coding upstream 62962 9459334 ~ 9467512 (+)
AMCG00011067 NA coding upstream 90683 9435209 ~ 9439791 (+)
AMCG00011066 NA coding upstream 100394 9425182 ~ 9430080 (+)
AMCG00011065 hpca,LOC105005722,LOC103394251,LOC101072338 coding upstream 121460 9391398 ~ 9409014 (+)
AMCG00011074 NA coding upstream 139373 9344531 ~ 9391101 (+)
AMCG00011075 NA coding downstream 2284 9551804 ~ 9557387 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding downstream 17000 9566520 ~ 9574704 (+)
AMCG00011080 gale,LOC107583591,LOC107721820 coding downstream 25609 9575129 ~ 9581745 (+)
AMCG00011079 NA coding downstream 41552 9591072 ~ 9592187 (+)
AMCG00011082 NA coding downstream 174290 9723810 ~ 9732443 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 48800 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 54631 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 177887 9352373 ~ 9352587 (+)
G104079 NA non-coding upstream 304296 9223185 ~ 9226178 (+)
G104062 NA non-coding upstream 371255 9158321 ~ 9159219 (+)
G104204 NA non-coding downstream 143624 9693144 ~ 9746864 (+)
G104221 NA non-coding downstream 323133 9872653 ~ 9872890 (+)
G104255 NA non-coding downstream 1006209 10555729 ~ 10617196 (+)
G104271 NA non-coding downstream 1174030 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 1823034 11372554 ~ 11377085 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 977869 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2426966 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 2609543 6892397 ~ 6920931 (+)
G103542 NA other upstream 2887846 6641983 ~ 6642628 (+)
AMCG00010979 NA other upstream 3134990 6387036 ~ 6395484 (+)
AMCG00011089 csmd2 other downstream 654097 10203617 ~ 10271863 (+)
G104273 NA other downstream 1269168 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 2094497 11644017 ~ 11651021 (+)
G104382 NA other downstream 2116678 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 2259326 11808846 ~ 11810822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location