AMCG00011077 (heyl,LOC105919519,LOC108238519,LOC102235766)


Basic Information

Item Value
gene id AMCG00011077
gene name heyl,LOC105919519,LOC108238519,LOC102235766
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9508584 ~ 9516296 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011077
agagagagagagagagagagagagagagagagagagagaataggagAACAAgagacctggagagagagaaacaacttACGGATACAGTAGAtcaacagagagacagaaagaggcAGGGGTTGGGGACAGCTTAGGGTTCAACATCTTTTGGGCAGTGAGCATTGGGGGCAATCCATGAGGATCTGAACACAGCAAACAGGAAGCCAGGGGTGgtttaacagaaaataagaaaaaaaacacaactgaggactttctgaaacaaagagacggagacagagagagggacagagacagagagagggggacagagacagagagagggggacagagacagaggggggcAACAGAAACACTGCCACTGACTGAGCTAAGGACAAAAAGAATCAGAGGGCGCGCACCCccggagacagagagagagagacagcgagagagaaGGTCGGCCTTGACAGGGTCCCCTGTTTCGGGGGGTGGGCTTGGGCTGCAGTGGAGAGGAGCCCTATCCCGCCTGAACCCAGCCACACACTACCAGAAGAGCCCCGGGGACAAGCAGTGTGAGCGTccgtcagtctgtctgtcactcTGTCAACGTGGGACAGAGGCGGCTCGGCCATGAAGAGACCCCACGAATACAGCTCCCCGGAGACCGACCCCGATGAGCTGATTGACGTTGGACAGGAGGACAGCTACTGCCCAGTGACGGGTTCCATGTCCCCTGGCAGCACCTCACAGATATTAGCACGCAAGAAACGCAGGGGGATTATCGAGAAGAGACGGAGAGACCGCATCAACCACAGCCTGTCCGAGCTGCGTCGCCTTGTCCCCAGTGCCTTCGAGAAGCAGGGCTCCTCCAAGCTGGAGAAGGCCGAGATCCTGCAGATGACGGTGGATCACCTGAAACTGCTGCATGCCATGGGGGGGAAAGGCTACTTTGATGCCCGGGCCCTGGCAGTGGACTACAGGACACTGGGTTTCCGGGAGTGTGTGGGCGAGGTGGTACGGTACCTGAGCTCCCTGGAGGGACTGGAGACCCCGGACCCCATTGGGGCCCGCCTCGTGTCCCACCTCAGCCACTGTGCCAGTGAGCTCGATCCCCTCCTGCAGAGTCCCGCCGCCCTGCCCTTCCCCCCCTGGCCCTGGGCCTTCCCCCagctctccccctcctcctcttcgtcctcctcctcctcctcctcctcctccttccccaggGCAGTGTGTGATGTCCGTCTCCCCCGCAGAGACATTCCACCCCCCAACAGCACCCTGCTGGCCGCCTACCACTCCCCTGCCCTCCGTTCCGCTCCTATCGGTTGCCTGCCCACCAGTCAACTGGCAGCCCCCCTGTCCTCGCCCCCTCTGCGCAGAATCCCCTCCCTGCCATCCCCGGTGGGGCACAGACTGTCCCAGCCATCTTCGGACACCCAcacctcctcccctctcctggctccTGCTCCCTGTGGCCCTCAGATGTCCTTCAGACCCTTCACCCACTTTGTGCCACCAGCCCCTGGCACCCAGCGTGGGGGCGCAGGCAATGCAGGCAAAGCCGCCCGCTCCTGGGGCACTGAGATCGGAGCCTTCTGAGCCAGGAACTCAACAGCTGGCACCGGGATTCCCACCCAGCAAAGACACCCCTCTTTCAGACAACAGCACACAGCCAACATCACAGGGAACGGACGTCAAATGCAAACCTTTTTGATTTCCCCACCCCAGACAGTGAGCTTCGAGAAGTCAAGAGTCGGCTGGCAGTCGGGCTGGAGAAGGGGGTCGGGGTTCCGGGTGGAAGTATTCAGAGGGCAGCGGACTACAGCAGGGGCACGATTGATTCACTACGAATCTGGGCGACTTGACAAACATCACCAGGCACCAGCAAAGGAACGGCAGAGATATCCATCAAGACACAAATTAGATCAGGTTGCTTCCTggaatgagagaaaaaaaatctaattaaagagAACAGAAACCGAACTGAACAAGAAGAGTTTCTGCTTTGACAGATGAGCTGAGAGAAGCACTATATGGACCTACCCAGATGAACATTGCGTGGGCTCTCCGTGTCCTTTTACAGCCACAGAGCACTCTCTCGAATGCAACATGACAGAGACTCAGCCCATGACCCAGGCTGGCAAAGTGGCAGAGCTCAGTGTCCCAGTTGTGTAGCTGTTTGATTTTCTATGATTCTCTCTTTGCCATTTTGTGTGagtgttgatttttatttacttcttttgttatcattataattattatttttaaacatctgaCACTGTCTGATGtccatttttatattgttcagTCCCCCAGGAGGACGAGGTGAGGGGTTGCAGAAGATtgttcatacaaaatatatgattttaaaaacagctaTCCATTCtcattgttgtattattattttttggagaGTGAAAGATAGAGATGAGAGTGTG

Function

symbol description
heyl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; regulation of neurogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within Notch signaling pathway and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epidermis; nervous system; neural rod; neural tube; and tail bud. Orthologous to human HEYL (hes related family bHLH transcription factor with YRPW motif like).

NR:

description
PREDICTED: hairy/enhancer-of-split related with YRPW motif-like protein

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011077 True 2420 mRNA 0.55 5 9508584 9516296

Neighbor

gene id symbol gene type direction distance location
AMCG00011078 NA coding downstream 9501 9489542 ~ 9499083 (-)
AMCG00011071 pabpc4,LOC107659242 coding downstream 19937 9474557 ~ 9488647 (-)
AMCG00011072 ppie coding downstream 35509 9468676 ~ 9473075 (-)
AMCG00011070 NA coding downstream 48289 9455891 ~ 9460295 (-)
AMCG00011069 NA coding downstream 64250 9438987 ~ 9444334 (-)
AMCG00011083 NA coding upstream 228952 9745248 ~ 9749899 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding upstream 236400 9752696 ~ 9753490 (-)
AMCG00011092 NA coding upstream 943266 10459562 ~ 10479148 (-)
AMCG00011103 NA coding upstream 1853404 11369700 ~ 11395747 (-)
AMCG00011104 NA coding upstream 1915410 11431706 ~ 11434381 (-)
G104126 NA non-coding downstream 95662 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 243097 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 543005 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 543303 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 697562 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 1207294 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1429705 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1899894 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1904453 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 1994927 11511223 ~ 11593619 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 272356 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 644533 8819551 ~ 8864051 (-)
G103832 NA other downstream 1481553 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2863861 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 3534277 5965133 ~ 5974307 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 85081 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 224837 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2442942 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2474533 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2550199 12066495 ~ 12069079 (-)

Expression


Co-expression Network