AMCG00011078


Basic Information

Item Value
gene id AMCG00011078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9489542 ~ 9499083 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011078
aaaaaaatctctgCAGCACATCTGCATACAGTATATGTTTGCAGTGTCACGGGCAAAGTGCAGTTAGCTAAAAGCCCGGGAGGATCTGCTCTGATATAAACAGAGAGGTGATCTTGGGTGTGCAACATTGGGGAATCTCAGCACTGTGAGGAGGATCTCCCTTGATAAGTTGTGCTGTCTTTGAGAAATGAGAGggtctctgctgctgctgtgtctgGCTGGGCTGTGGGGCAGCTCCAGCACCACAGACTGTGTGAGACACCTGAGTGCGAACACTGACTTCCCAGGAGATGATGTCTTGCATATTTTAACGCCGGATGTTGATTACTGCCAGCTGGCCTGCACTCAGCATCCCACCTGCCTGTTCTTCTCATTTCACACCTCAGAGTCTACTATAGATAAAAGGCAATTCTACTGTTTCCTGAAGTCCACAAGCTCTGGCAAGCCCAGCGTTGAGAAGGAGTTGCAGGGAGTGATATCAGGCTACACACTGAAGGACTGTGGGGATGACCCTACAGACACCCCAGAGGACTGCCAGAAAGCCTGCACGAGAGACCTGGACTGCCAGTTTTTCAACTATCACACAGACACCTTCATAGCACCTGCTGATCGTCAAAAGTGTTATTTGAAGCACATCAAGAGCCTCCCCAGCCCTCCAACTATCAAGTCCACTAACAGCGTGATTTCGGGGTTTTCCCAGCGCCCCTGCCTCACTCAGAGCACTGGGACAGAGTGTCAGTCCAAGATCCTGCAAAACACTGAAATCCCGGGGATGGACTTCATGGAGCTGCCCGCTCCCTCTCCGGAGTACTGCCAGCTGCTGTGCACGACTCACCCTCACTGCACCTTCTTCTCCTTCACCAACGAGAAATACGCCACGCCCAATAAGAGgctAGTCTGCTTCCTTAAAAATGGAGACACGCGACCAATCACAGCCAAATCAGAATATTGTTACCTGAAGAAGGTGATTTCGGTCCCTTTGCCACCCAAGATCCTATCTCTGCAGGGGACTGTGTCTGGGTTTCAGATAAGAGGCTGCCAGGAGACTGTGCCAGAAGTGACCGAGTGTGGGAAAGCAAAGGCAGGCCTTCAGCGCATTCTGGGTGGTGAGAATGCCAAGCTGCAGCAATGGCCCTGGCAAGTGTCCTTGCACCTCTCCTCTCACTTGTGCGGCGGCTCCATCTCGGACGCACTTTCTGAATACTACAGAGTGGACAAGATCATTCAGCATCCAGGGTATGATGAAGACACTTTCAAAAATGACATCGCCTTGCTGAAACTGAACAAACCCATCAAGTACTCAGaTATACAACAGCCCATTTGCCTGCCAGATGTGCAGCAAGTAGAGATGTTCTGGGAAAAGTCGTGTTGGATTACAGGCTGGGGATACCTAACCTCAGTGGGGCGTCTGCCAAATACCCTTCAGCAAGCAGCGGTCCCTCTGATTAAACATGAGGCCTGCAGCTCCTTGTACACTTCCAAACCTGTCTTCAACACCATGTTCTGTGCAGGATATTCTACAGGGGGAACTGACACTTGTAAGGGTGACAGTGGGGGCCCTCTAGTGTGCCAGGCTGGGGACACGTGGTACCTGATGGGCATCACCAGCTGGGGGGATGGCTGTGGGGAACCAGGGAAGCCAGGGGTGTACACCCGTGTTGAGAGCTACAGGGATTGGATCACAACCACCATCAGTAAGAATTTGTCAGTCAAGTAACACTGGACTTATTTACAGCTTTTGACTCTCACTAAAGGACAGTAGTACAGGAGAAGATGTAAACCGGCCAACCAGAACACTTCAGAAAGGtcacaaagaagaaaaagctaATCCAGTTCCTGTGCTCTTCTTCCCCGAGTTATTCACAGACCTTTACCTTACAGTTGTTCACCTGTTCCAGCAGGGAAAACCCTGTTCCTACTATCACGGACaaactttattgaaatacatgatatcaatgttaaaaacaaagaggtCCCCATGGATGTGTAagcaaattattgttttatttaatacaacatAACAGGGGTTACAGTGTGAAAGAACAGTGATTGATGACCTTCTGTAAAACAATACCTgtgaaattaaattcattacTGCAGTAAGGTTTGTGTGCAACTGTCCATATCTCTCAATCCTACATCATTGGAAAgctgtgtaaataaaaatgtgaagttacaacaatgataatattatgaataatacaaatggaCAGTTCTAATTAGAACATTAAACCTCTCTTGGAGATATGAACAATATTCCACTTCTAAGGCCAGTACAATatgaaatatgctttttaaaataaaa

Function

GO: NA

KEGG:

id description
K01323 F11; coagulation factor XI

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011078 True 2305 mRNA 0.47 15 9489542 9499083

Neighbor

gene id symbol gene type direction distance location
AMCG00011071 pabpc4,LOC107659242 coding downstream 895 9474557 ~ 9488647 (-)
AMCG00011072 ppie coding downstream 16467 9468676 ~ 9473075 (-)
AMCG00011070 NA coding downstream 29247 9455891 ~ 9460295 (-)
AMCG00011069 NA coding downstream 45208 9438987 ~ 9444334 (-)
AMCG00011068 NA coding downstream 54945 9430586 ~ 9434597 (-)
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding upstream 9501 9508584 ~ 9516296 (-)
AMCG00011083 NA coding upstream 246165 9745248 ~ 9749899 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding upstream 253613 9752696 ~ 9753490 (-)
AMCG00011092 NA coding upstream 960479 10459562 ~ 10479148 (-)
AMCG00011103 NA coding upstream 1870617 11369700 ~ 11395747 (-)
G104126 NA non-coding downstream 76620 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 224055 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 523963 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 524261 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 678520 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 1224507 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1446918 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1917107 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1921666 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 2012140 11511223 ~ 11593619 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 253314 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 625491 8819551 ~ 8864051 (-)
G103832 NA other downstream 1462511 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2844819 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 3515235 5965133 ~ 5974307 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 102294 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 242050 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2460155 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2491746 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2567412 12066495 ~ 12069079 (-)

Expression


Co-expression Network