AMCG00011083


Basic Information

Item Value
gene id AMCG00011083
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9745248 ~ 9749899 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011083
CAATATTTCTGttcgtttttttcttgttttacagtAATATCAACGTCATGTATTTAGAAGGGGTTTGAATCGCATAATTTATTGCTGCAATTCCGAGCGGATTTCAGCTGTGGTTTTCTGCGGGAATGTGTGTCTGTTGCCTAGTTATCGAGGACCGGCAGGAGGGGGTTACTTCCCTGGAGGTCAGCCTCCCCCTGGGGGTCCGTATGGAGGGGGTGCGCATCCAGGCGGTCCAGGGGGGCAGTATGGTGGGACGGCCCCTCCACCACAGCAGGGCGGTCAATATGGGGGATCTGCTCCCCCGGGCAGTATGCCCTACGGGGGGGCCGCACCGCCACCTGGCAGCCACTATTCTGGGGGTCCAGCTCCAGGTGCCCCCTATGGCTCATACGGTGCCCCAGGCTCTGGAGGGCAAtatggaggaggaggtggagggggagCCGCCCCAGGAGCTCCCTATGGAGGAGCGGCACCGGGAGGGGGACACTTTGGAGGGCAGGCACCTGGCGCACCCTATGGGGGATACGGTCAACAACAAGGCGGACCATATGGGCAGCAAGCTCCCGCAGGTTAGCTCAGGATTTAAAGTATATAGCCATCCTCACTCACCGCGTAACATCCCACCCGGAGTGGATCCAGAGGCATTCCAGTGGTTCCAGACTGTGGACACTGACCACAGTGGCTCCATCACACTGAAGGAGCTCAAACAGGCGCTGGTGAACTCCAACTGGTCAGCCTTCAATGACGAGACCTGTATGATGATGTTAAACATGTTTGACAAGACCAAGACGGGGAGGATTGACCTGTTTGGCTTCTCCGCGCTCTGGGGTTTTCTGCAGCAGTGGAAGGCCCTGTTCCAGCAGTTTGACCGCGATCGCTCAGGAAGCATCAGCGCCAGTGAGCTGCACCAGGCCTTTGGCCAGATGGGCTACAACATCAGCCCTCAGTTAACGCAGACACTGGTCTCTCGATTCGGCACCAGGGGGAGCCAGGGGAACATCCAGCTGGACCGCTTCATCCAGGTGTGCACGCAGCTGCAGAGCATGACCCAGGTGTTCCGCGAGAAGGACGCGGGCATGACGGGGAACGTGCGCATGAACTATGAAGACTTCCTGTCCAGCACCATCATGAGGCTCATGTGAGAACTTCTCCTCTTCTCATCCCCACGTTGCCCCTGGGACTGGATCATGGCAGGGAGGGCAAGACCGCCCCTCTAATGGGTAGAACTTTAGGACAGTCGATCTCCACACTTCCGCTAGTAGACATGCCTGGTGCTACGATACCTGTGGCCTGCTGCAATGGTTTTCACTGCTCAGCTTTCACATGCTTAAGCAGGACTAAGCCATACCTAGCTTACTTCCAAGAGTGCAATTCCAATTACGTTTTGGGTCACTGAAGAAAAGGTTATAAAGTAaggtattattttagtttttattcctGAAAAGAGCTTCTGAGAAAgatgcccccaccccccttcccccaAATTTAAAGGTTGATTTTATCTGTTGGAAAGTTGCAAATTACTTGCAAAATTATTTCagaattattacaaaaacaacgTGCCACAAAATTGGTAACAGGCCAGAAAAGGCAATATCAGAGACCCAGCACTATTGTGTCAAACTACCTGCATCTCATTATTGAAGCCAAGTTCTCATTaagagagaaatacattttcattacattttaaacttgcttCACCACTCCATTTCTAATCAAGGAGGGGAGGTAGAGGGTGACAGCTTTGGAAATACTTGAGCTACCATATAAACAGTTTATGAAGCATGTTAATAACCATGTAGGCCTAAtccatttttagatttttctataGCACAATACTTCATTTATTCTGTTTGCACTTGGTGTATAAACAGGAATACAAAAGTACCAtagtcatttaattaaaatagaaagggattttaaatgatgattcatatgcttttcatttttaacagtaAAATGCAAAGACAACAGGGTTGATACATTTGACATTCTTGCTTTTACATATGACTGGTCATCTGCCCTTAAATGGGGAACAAGGAAAATGGGATCATCAAACTTTCACTtacttgaaaggaaaaaaaaaatatgtgtatttcaaaatgtatttccttgAATGCCTTTTCTAAAGAAAGTGTGAACAATACAGAATTGTGAACATCGTTGGTAGTTAATTCACATGTCAAATACAGAATGGTAGCAAGCTGCATTTTCAGCTGGTAAGTTTAATTAGTCTGCCAAGCAATATAGTGCGGTTTCTACcatgccaattttttttttatacaccagagagagttgttttcatcatttaaaTCACAGTATAGAACCTTTATTTAACAATAGGTTAACTTGCTGAAGAAATTAACTCTGGAATGAAGCCCATTTTAATGGTGTTTCCACTGACAATATGATGTGCCACTcttgtatataatgttttttttttttttttttttt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23905 PEF1; peflin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011083 True 2454 mRNA 0.46 6 9745248 9749899

Neighbor

gene id symbol gene type direction distance location
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding downstream 228952 9508584 ~ 9516296 (-)
AMCG00011078 NA coding downstream 246165 9489542 ~ 9499083 (-)
AMCG00011071 pabpc4,LOC107659242 coding downstream 256601 9474557 ~ 9488647 (-)
AMCG00011072 ppie coding downstream 272173 9468676 ~ 9473075 (-)
AMCG00011070 NA coding downstream 284953 9455891 ~ 9460295 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding upstream 2797 9752696 ~ 9753490 (-)
AMCG00011092 NA coding upstream 709663 10459562 ~ 10479148 (-)
AMCG00011103 NA coding upstream 1619801 11369700 ~ 11395747 (-)
AMCG00011104 NA coding upstream 1681807 11431706 ~ 11434381 (-)
AMCG00011112 NA coding upstream 1903103 11653002 ~ 11661299 (-)
G104126 NA non-coding downstream 332326 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 479761 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 779669 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 779967 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 934226 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 973691 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1196102 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1666291 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1670850 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 1761324 11511223 ~ 11593619 (-)
AMCG00011086 NA other downstream 1463 9741133 ~ 9743785 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other downstream 125969 9601377 ~ 9619279 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 509020 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 881197 8819551 ~ 8864051 (-)
G103832 NA other downstream 1718217 7938137 ~ 8027031 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2209339 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2240930 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2316596 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 2576198 12326097 ~ 12328282 (-)
AMCG00011152 kcnip1 other upstream 2678094 12427993 ~ 12457327 (-)

Expression


Co-expression Network