AMCG00011088 (csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197)


Basic Information

Item Value
gene id AMCG00011088
gene name csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 10073722 ~ 10087704 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011088
ATGCCGAATGCCTTTCTGCTCGTAGAGAGGTCCCTTGTGGGCCTCCTGGCAGTTGCCATTGCCACCCGGAGAGTGCCGCTGCACATGGCTGagaaaataaaaaatgtcgcTATCATCAGCCTTTTCCACATCTCAATACATCGGTATTACTTCCTCCAGAAAGAAACTGTGATTAAAGGTAGacaatttgtttattgtgttcCCATAGCTCTGCCCAGCTACACGTGTGGGAACCCTGGGCGGCTGCAGAATGGGCTCCAGCAGGGTTCCACCTTCAACATTGGAGACAAGATCCGATACAGCTGTAACCCCGGGTACGTGCTGGAGGGCCACACCATCCTGTCCTGCCTCGCCACGTCATCAGGAACAGCTGCCTGGGACTTCCCTCTGCCCTACTGTCGAGCGGACGATGGCTGTGGGGGAACGCTGCGGGGTCAGAGCGGGGTCATCACCAGTCCCAATTACCCCCAGGAATATAACAACCACGCCGACTGCACCTGGACCGTGCTGGCCGAGCCGGGGGACACCATTGCCCTGGTCTTCTCTGACTTCCAGCTGGAGGATGACTACGACGTGCTGGAGATCAGCGGCACCGAAGGCTCCTCGCAGTGGCAAGTACCTGGGTGTCATTCCCCTGTAAAGAATGTAGCTTTGGTTTCAGGATGTCCGTTGGGTTTGTGTGCAGACACAGCAGACTTACACGGAGCTCTCCCTTTGTTAACGCAAGCAGTACGCCATGGAGTGGATTTTGCTTCTGATGTCAATTCCCTGCTTCTTGGGTTGTGCCTGTCAGTGAAGGTTACAGAGCACCACTCTTGTAAAATTTAG

Function

symbol description
csmd2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2).

NR:

description
CUB and sushi domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011088 True 828 mRNA 0.54 3 10073722 10087704
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00011087 csmd2,LOC106957799,LOC103363662 coding upstream 54789 10018562 ~ 10018933 (+)
AMCG00011082 NA coding upstream 341279 9723810 ~ 9732443 (+)
AMCG00011079 NA coding upstream 481535 9591072 ~ 9592187 (+)
AMCG00011080 gale,LOC107583591,LOC107721820 coding upstream 491977 9575129 ~ 9581745 (+)
AMCG00011081 hmgcl,LOC106610807,LOC106578367 coding upstream 499018 9566520 ~ 9574704 (+)
AMCG00011090 csmd2 coding downstream 51757 10139461 ~ 10192241 (+)
AMCG00011091 trappc3,LOC107653823,LOC107564495 coding downstream 410773 10498477 ~ 10503466 (+)
AMCG00011095 NA coding downstream 513776 10601480 ~ 10603114 (+)
AMCG00011093 col8a2,LOC106570550,LOC107724334,LOC107565043 coding downstream 521253 10608957 ~ 10610882 (+)
AMCG00011094 tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508 coding downstream 553076 10640780 ~ 10651427 (+)
G104221 NA non-coding upstream 200832 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 326858 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 592048 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 597879 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 721135 9352373 ~ 9352587 (+)
G104255 NA non-coding downstream 468025 10555729 ~ 10617196 (+)
G104271 NA non-coding downstream 635846 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 1284850 11372554 ~ 11377085 (+)
G104310 NA non-coding downstream 1330962 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 1445216 11532920 ~ 11593994 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 524202 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 1521117 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 2970214 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 3152791 6892397 ~ 6920931 (+)
G103542 NA other upstream 3431094 6641983 ~ 6642628 (+)
AMCG00011089 csmd2 other downstream 115913 10203617 ~ 10271863 (+)
G104273 NA other downstream 730984 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 1556313 11644017 ~ 11651021 (+)
G104382 NA other downstream 1578494 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 1721142 11808846 ~ 11810822 (+)

Expression

AMCG00011088(csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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AMCG00011088(csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197) Expression in each Bioproject

Bar chart with 4 bars.
AMCG00011088(csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.6.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014947 csmd2 coding NC_007130.7 CM002903.2 36114846 ~ 36675023 (-)