AMCG00011089 (csmd2)


Basic Information

Item Value
gene id AMCG00011089
gene name csmd2
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 10203617 ~ 10271863 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011089
CTGCACTTCCTGGTCTTCCACACGGAGGAGGTCCACGATGTTCTGCGGATCTGGGATGGACCTCAGGAGGGGGGGATCCTGCTGAGGGAGCTGAGTGGCTCCTCACTGCCCCCCGACATCCATAGCACCTTCAACTCTGTCAGCCTGCAGTTCAACACGGACTTCTTCACCAGCAAACAGGGCTTCGCACTGCAGTTCTCAGCTACCTCCTGCAATGACCCCGGGACGCCAGCCAATGGGACAAGGAGCGGAGACAGTCGGGAGCCCGGAGACCACGTGATGTTCCAGTGTGATCCCGGCTATGTCCTGCAGGGGGCGACCAAGATCACCTGCACTGAAATTGAGAGCCGCTTCTTCTGGCAGCCAGATCCTCCGACCTGCACAGCTCCGTGCGGAGGGAACCTCACGGGCCCCGGTGGACTGATCCTTTCTCCTGAGTATCCAGAACCCTACCCCCACGGCCGCGAGTGTGACTGGACTGTCTCTGTGACCCCCGACCACATAATCGCGCTGGCCTTCAACCATTTCAGCCTGGAGCCCAGCTATGACTTCCTGCACATCTATGATGGACCAGACTCGCTCAGCCCCTTGCTGGGCAGTTTTTACGGCACAGACGTCCCTGAACGCATTGAGAGCAGCTCCAACACGCTCTTCTTGGCCTTTCGCAGTGACGCCTCCCTGAGCAGCAGTGGCTTCGTACTTCAGTACACCGAAAATCCAAGAGAGTCGTGCTTTGAACCGGGGCCCGTCCGCAATGGCACACGCGTGGGATCAGACCTCAAGCTGGGTTCCACTGTTACCTTCTACTGCGACAGTGGCTACGTCATCGAGGGAGATCCCACTCTGACTTGCATAATGGGCGGAGACGGCAAACCCAATTGGAACAAACCAAGGCCCACCTGCATAGctccctGTGGTGGACAGTACTCTGGCCTGGATGGAGTGGTGTTATCACCAGGCTACCCTGGCAACTACAGCAGTGGGAGGAGCTGCTTGTACTCCATCGTGGTACCGAAGGAGTATGTTGTCTTTGGGCAGTTTGCCTTTTTCCAGACTGCGCTGAATGACGTAGTGGAGGTGCATGATGGGCCTACCCAGCATTCCCGGCTCCTCAGTTCTCTGTCAGGATCACACACAGgtgAATCACTTCCACTGGCAACATCGAATCAGATCCTCATTAGATTCAATGCCAGAGGTCAAGCCACATCCCGCGGCTTTCACTTTGTGTACCAAGCTGTTCCTCGTACCAGTGCCACTCAGTGCAGCTCGGTCCCAGAGCCGCGATACGGGAAGAGGATTGGGAACAATTTCTCGGTGGGCGCGGTGATTCAGTTTGAGTGCAACTCCGGCTATGTGCTGGAGGGCATCAAAGCCATCGAGTGTCTCACTGTCCCGGGAGCTCTGGCCCAGTGGAACAGTACTGTTCCCAGCTGTATCGTGCCCTGTGGGGGGAATCTGACTCAGAGGACTGGGACCATTCTGTCTCCGGGATTCCCAGAGCCGTATCTGAACAGCCTGAACTGCGTGTGGAAGATAACCGTCCCCGAGGGCTCCGGCATCCAGATCCAAGTTATCAGCTTTGTGACGGAACACAACTGGGATTCTCTGGAGGTGTTTGATGGAGGTGACAACACAGATACCATGCTGGGCAGCTTCTCTGGTACAACTGTTCCTGCACTGCTGAACAGCACATCCAACCAGCTCTATCTTCACTTCTTCTCTGATATCAGCGTCTCTGCCGCCGGCTTCCACCTCGAGTACAAGACGGTGTCTTTGACCAGCTGTCCAGAGCCAACGATTCCCAGTAATGGAATGAAGCTGGGAGACCGATACCAAATGAACAATGTGGTATCGTTTCAGTGTGAACCTGGCTATACCCTTCAGGGCCATTCTCACATCTCTTGCATGCCTGGGACAGTGAGACGCTGGAACTTTCCTCCTCCACTTTGCATTGCTCAGTGCGGAGGGATTGCAGAGGAGATGGAAGGCATGGTTTTAAGTCCAGGGTTTCCAGGGAACTATCCCAGCAATAGCGACTGCACCTGGAGGTTATACCTGCCGGTTGGCTATGGTGCCCACATCCAGTTCCTGAATTTCTCCACTGAGGCCAATCATGATTTCATTGAGATCCGCAACGGACCCTTCGAAACCAGCTCTGTGATTGGGAGGTTCAGCGGACAGGACCTTCCCCCTTCCCTTCTTACAACTTCCCACGAAACTACAGTGTACTTCCACAGTGACCACTCCCAGAACAAACCTGGCTTCAAGTTTGAGTATCAGGCCTATGAACTGCAAGAGTGCCCTGATCCAGAGCCCTTTCACCATGGTGTGGTGATTGGTGCTGGGTACAATGTAGGCCAGTCCATCTCCTTTGAATGCCACCCAGGGTACCAACTGGTAGGAGACGCCATCCTGACCTGCGAACATGGCACCAGTCGCAACTGGGACAATCCCTTTCCCAGGTGTGAAGTACCCTGCGGAGGCAACATCACGGCTGACAATGGGACCATTTTCTCGCCGGGTTTTCCGAGTGAATACCCCAGCTCGGCGGACTGTGTCTGGCTGCTCACTGTGCCCCCAGGCCACGGTGTCCACATCAACCTCACTCTAATGCAGGTCCAGGGTCCCAGTGACTTCATCACCATTTGGGATGGTCCCCAGGAGACGGACAGGAAGCTGGGGGACTTCAGCGGTAGTGAGGTCACAGAATCTCCCAGCAGCACCTCCAACCAGGTCCTCATTCGTTTCCATAGTGATACAGAGAAAGGAGGGCTCTTCAGAATCAGCTACCAAGcgTTCAGACTTCAGTTTTGTCTCCCACCGCCTATCATCCCCAATGCTGAAATCCTGATGGCCAGTAAGGAGTTTAGAATAGGAGATATCGTGCGCTATAGGTGCTTTCCTGGATTTCGGCTCAGTGGCAATGAAATCCTTACCTGCCGACTGGGGACACACCTGGAGTTTGAAGGACCTCCACCCAGCTGTGAAGTAAACTGCCCCATGAACGAGGTGCTGACAGACTCCACAGGGGTGATTCTGAGCCAGAGCGGCTTCGCGCACTTTGAGATGTGCTCCTGGGTGGTGAAGGTGGAGCCGGGGTACAACATCTCCCTCACCATCGAGTACTTCCAGAGCAGCCGGCAGTACGACGAGCTGGAGATCTTCGACGGCCCCTCCAGACAGAGTCCTCCTCTGATCACACTGAGTGGGAACTACTCCTCCCCACTGACCATCACCAGCTCCACCAACAAAGTCTACCTGCACTGGTCTTCAGATCACGCCTCCAGCCTGAAAAGATTCCGGATACGCTACTCAGCCTCGTACTGCAGCCCCCCCAACCCTCCAGCCAACGGCTCTGTCCACAGTCAGACCGGCACCAAGCTGGGGAGCACCCTGCGCTTCAGCTGTGATCAGGGTTTCCGGCTGGTGGGGCAGAGCATGGCTACCTGCACCCGCTCCTCGCAGGGCCTCTACCAGTGGAATGCCCCGGTGCCCCTGTGCCAAGTGGGTTCCAGAGCCGTGTATCACTGCAGCCCAGGCTTCAGACTCGCTAATGAGCAGCCTATCTCCATCGTCTGCCAGGAGAGCGGCAAGTGGAGTCCCAGTGACACCCCACCCCAGTGCATAGCTGTAACTTGCCCAGAGATTGGTCATACCGCAGTAGAGCACGGGAGATGGCGGCTGATCTACGGCTCTCATAACCAATACGATGCACACATGATGCTGGTCTGTGACCCTGGCTACTATTACAGGGGTTCCCGTGTCATCAGGTGTCAGGCCAACGGCACCTGGAGCTTCCCAGATCCCATGCCTGTTTGCAACAttatCTCCTGCGGGGAAGTGGCCACCCCTCCCAATGGCAACAAGATCGGGACCCTGACCGTGTATGGCGCCACCGCCATCTTCTCCTGCAACACCGGCTACACGCTGGTGGGATCGCGAGTGCAGGAGTGTTTGGCCAACGGGCTCTGGAGTGGAACGCCTGTGCAGTGTCTCTCTGGACACTGCGGCACCCCGGAGCCCATTGTGAACGGTCAGATTAGCGGAGAGAATTACAACTACCGCGGCAGTGTGGTATACCAGTGTAACCCTGGCTTCCGGCTTATCGGCGTGTCGGTGAGAATCTGCGAGCAAAACCACCGCTGGTCTGGAAGAAcccctgtgtgtgtccCCATCACCTGTGGCCACCCTGGCAACCCCTACAACGGCATGACCCTGGGGACACAGTTCAACCTCTACGACTTGGTGAGGTTCACTTGCAACTCTGGCTACAAACTGCAGGGGGCAGTCAAATCTCAGTGTCAGCCCAACGGTCAGTGGAGCAACTCCCTGCCAACATGTAAAAGtaagttcagtACCACCGTGTCCTACTCCTGCAGCCCTGGGTACTACCTTCTGGGTACCGATGTTCTGGCCTGCCAGGGGGATGGCACCTGGGACCGATCCCTGCCAATGTGTCTCTCCAGTAACacgtttttttctctcactcttCTTTCCCCCCTCTTGCTGGCAGTGGTGCTGTGTGACCGGCCCAGTATCCCCCCCTATGCCCAGATCTCGGGGGATAGGCGCACTGTGGGCTCAGTGGTGCGCTACAGCTGCATGGGGCGCCGCACTCTCATCGGGAACTCCACCAGGATGTGCCAACTGGATGGGCATTGGAGCGGGTCTCTGCCACACTGCTCTGGGGAGAGCCAAGGCCTGTGTGGGGATCCCGGCGTGCCAGTCCACGGCATCCGCCTGGGAGAGGAGTTCTCGGTGGGCAGCGTGGTGAGGTTCAGCTGCGAGCCGGGCTACGTCCTCCGGGGCTCGTCCGAGAGGAGCTGCCAGGCCAACAGCACATGGGCCGGCACGCAACCCGAGTGTCTCGTCGTGTCCTGTGGGAACCCAGGGACGCCACGCAACGCGCGCATCCTCTTTCACGACGGCCTGGTGTTCTCGCGTTCCATCACCTACTCCTGCCGTGAGGGTTACTACTCCACTGGGCTACTGACTCGACACTGTACCGTCAATGGCACGTGGACTGGCAACATGCCTGAGTGCACAGTGATCAACTGTGGAGACCCCGGGGTGCCAGCGAACGGTCTGAGAAGCGGGAACGAGTTCACCTACAACCACACGGTGTCCTTCCAGTGCAGTCCTGGCTTCACCATGGACGTGGACCGCGCCTCCAGCCTCGTCTGCACCAAAGACCGCACCTGGAACGGCACCAAGCCCATCTGCAAAGCGATCATGTGTGCAGCTCCCCCTCCCATTCCCAATGGCCGGGTCGTGGGTCTGGATTTCCAGTGGGGCTCCAGCTTGAGCTACGCCTGTGCCGAGGGGTACCAGCTCTCGCTGCCCGCTGTGCTGACCTGCCAGGGAAACGGCACCTGGAGCGGCGAGCGGCCACAGTGCTTCCCTGTGTTCTGTGGAGATCCAGGGATCCCGGCTCAGGGCAGGCGGGAGGATCGTAGCTTCACCTACCTCTCCTCCGTCTCCTTCTCCTGCTTCCCCCCACTGGTGCTGGTCGGCTCCACCCGCCGCTACTGCCAGGCAGACGGCACCTGGAGCGGAGCCCAGCCCTCCTGTATAGACCCCAGCCACACCAGCTGTGTGGACCCTGGCGTGCCTCTCTTTGGAATCCAGAACAACTCCCAAGGATACCAGATTGGCAGCTTGTTGTTCTTCAGCTGCAAGAAAGGCTACCTGCTGCAGGGCTCCATCACCCGCACCTGCCTGCCCAACCTCACCTGGAGTGGCATCCAGCCAGAGTGTATAGCGCACCACTGCAACCAGCCGGAGCTGCCGGTGCGAGCCGACGTGAGCGCCATCGAACTGCCCTCTCTGGGCTACACGCTCCTACCCAGTGGAAAAACTGTTGGAACTGTGCAAGAGGTGCCCAATGCCAAACTTCCAGTCCCAGGAGATGTCTTTGCCAAGAACTCCTTGTGGAAGGGATCCTATGAGTACCTGGTGAAGAAGCAGCCAGCCATGCTGAGTATCACTGGGTTCGAGGCTTACAGCAACCGGGTCAACGCCACTCTGATCGACCACAGCGGCGTGGAGCTCAAACTGTCAGGCATCTACAAAAAGGAAGATGCCCACTTGCTGTTGCAGGTTTATCAGATCGGTGGCCCAGTGGAAATATTTGTCAACAAATTCAGGAGCGAAAACTGGGCTTTGGACGGCCATGTGTCTTCTATGGCCTCAAGTAACTCCTTTGTCTATCAGGGGTTTGTCCGGGGAAAAGGGTTTGGACAGTTTGGCCTCCAGAGAATAGACACCAACCTTATGGACCCCGACCCAGAGATCCCTGGTTACAACTTTGCGTCGAACAGCAGTTCAGTGGCAGCTGCCATTTTAGTGCCTTTCATCGCCATGATCATCGCAGGCTTTGCCTTGTATCTCTACAAACACCGGAGGAGACCCAAAGTCCCGTTCAATGGCTACGCGGGACATGAGAACACCAATGGAAGAGCTACCTTTGAGAACCCCATGTACGACCGCAACATTCAGCCTACTGACATCATGGCCAACGAAACAGAGTTTACTGTCAGCACAGTGTGCACTGCAGTA
>TU130296
TGATCATCGCAGGCTTTGCCTTGTATCTCTACAAACACCGGAGGAGACCCAAAGTCCCGTTCAATGGCTACGCGGGACATGAGAACACCAATGGAAGAGCTACCTTTGAGAACCCCATGTACGACCGCAACATTCAGCCTACTGACATCATGGCCAACGAAACAGAGTTTACTGTCAGCACAGTGTGCACTGCAGTATAGCACTCGCCCGCCCCACAGAATCCAGAAACAAAAGGGTGTCCTGTCACGTCATGCGTCTTCATCCGGTAAGTGTCCCTGAGGTCTCCGCACCCGGCTTCGAAGGGTGTGAGAATTACGCCATTGGAGACGGCTGCTTCTTTACCTGTGTCCAGACGGCGACCATGAGAAAACGAGATGGTAACTAGggagaaaatctgaaa

Function

symbol description
csmd2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2).

NR:

description
PREDICTED: CUB and sushi domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011089 True 6558 mRNA 0.57 45 10203617 10270251
TU130296 False 400 lncRNA 0.52 3 10269804 10271863

Neighbor

gene id symbol gene type direction distance location
AMCG00011090 csmd2 coding upstream 11376 10139461 ~ 10192241 (+)
AMCG00011088 csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197 coding upstream 115913 10073722 ~ 10087704 (+)
AMCG00011087 csmd2,LOC106957799,LOC103363662 coding upstream 184684 10018562 ~ 10018933 (+)
AMCG00011082 NA coding upstream 471174 9723810 ~ 9732443 (+)
AMCG00011079 NA coding upstream 611430 9591072 ~ 9592187 (+)
AMCG00011091 trappc3,LOC107653823,LOC107564495 coding downstream 226614 10498477 ~ 10503466 (+)
AMCG00011095 NA coding downstream 329617 10601480 ~ 10603114 (+)
AMCG00011093 col8a2,LOC106570550,LOC107724334,LOC107565043 coding downstream 337094 10608957 ~ 10610882 (+)
AMCG00011094 tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508 coding downstream 368917 10640780 ~ 10651427 (+)
AMCG00011097 NA coding downstream 767193 11039056 ~ 11093828 (+)
G104221 NA non-coding upstream 330727 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 456753 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 721943 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 727774 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 851030 9352373 ~ 9352587 (+)
G104255 NA non-coding downstream 283866 10555729 ~ 10617196 (+)
G104271 NA non-coding downstream 451687 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 1100691 11372554 ~ 11377085 (+)
G104310 NA non-coding downstream 1146803 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 1261057 11532920 ~ 11593994 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 654097 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 1651012 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 3100109 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 3282686 6892397 ~ 6920931 (+)
G103542 NA other upstream 3560989 6641983 ~ 6642628 (+)
G104273 NA other downstream 546825 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 1372154 11644017 ~ 11651021 (+)
G104382 NA other downstream 1394335 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 1536983 11808846 ~ 11810822 (+)
G104435 NA other downstream 1570266 11842129 ~ 11844089 (+)

Expression


Co-expression Network