AMCG00011093 (col8a2,LOC106570550,LOC107724334,LOC107565043)


Basic Information

Item Value
gene id AMCG00011093
gene name col8a2,LOC106570550,LOC107724334,LOC107565043
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 10608957 ~ 10610882 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011093
ATGCTACCCTTATTTCCTATGGAGATGAAGGGGGAACCCGGCCCTCAGGGCAAGCCTGGCCCCAGAGGACCAATTGGGCCACCTGGTGTTCCAGGGAAGCCCGGTATGGGAAAGCCAGGAATGAACGGCCCGCCAGGTCCACCTGGGCCGCAGGGTTTCTCCGGGATTGGAAAACCAGGATTGCCAGGGCTCCCTGGGAAGGCAGGGCAGAAGGGGCAGCCTGGACTGAATGGAGAGTTAGGCCAGAGGGGTGAACCAGGGCCCAGGGGGTTACCTGGGCAACCAGGCCTCCCGGGGCCAGCAGGCCTGTCATTGAATGGCAAGCCTGGGCTCCCAGGAGGTAGGGGGCTGCCAGGGGCCAGGGGTGAGCCGGGGCTGAAGGGTGTGCAGGGAGTGCCTGGGGACCAGGGAATCAAGGGGGAAAATGGCAATGGGCAACCAGGCCTGCCAGGTCCCAAGGGCCCCATTGGGCCCCCGGGGCCTAAAGGTGCTCCAGGCCTAGATGGGATTGGGAAGCCAGGACTAAATGGGCTGCCAGGGCCAGTTGGGCCAAAAGGAGACCAAGGGCTTCCAGGAATTCAAGGAATGCCTGGAGAGATCGGCCCACATGGGCCTCAGGGCCAGCCAGGGTTGAACGGAGTTGGCAAGCCAGGATTAGATGGCTTGCCCGGTGTGCCCGGGTCGAAAGGTCCCAAAGGTGAGCCTGGGCTGAAGGGGGTTCCTGGATTCCCAGGTTCCCCTGGCTATGGCAAGCCAGGGCTGATCGGCGAGAAGGGTGAGCAGGGCCCCACAGGGATGCCTGGATCCCCTGGGGACAAAGGGGTTCCGGGGTTGGATGGGCAGCCAGGGGATAAGGGTCATCAGGGACTACCAGGCAACCCAGGACTTCAGGGCCGCATGGGACTCCCTGGGAAGAACGGGATGCCAGGCCTGAGAGGTGAGGTGGGCCCTATAGGACCCCCTGGCCTTCCTGGCCTCAGGGGGGATCAGGGGCCCACTGGGTTGGGAGGGACGCCTGGCATTCCAGGGGAGAGGGGTTTGCCTGGTCTTATGGGACCTCTGGGGAAGACAGGGCCTAAAGGGGAGCCTGGACACATAGGTTTGCCAGGGGCCCCAGGGTTATCAGGAGTGCCAGGGCCAAAAGGGGAACCTGGTGAGGTTGGGTCTCCAGGGCCCAGGGGCAACTCTGGAATCCCTGGCATGCAGGGACAATCAGGGCCCATGGGTCCACAGGGTATTAAAGGGCAGAAAGGGGAGTCTGGTCTTCCCGGACGCCCAGGGGATGGAAAGATGGGTGAGCAGGGCCCTTCAGGGCCGCAGGGCCCTCCTGGGAAGCCTGGCCCAGCTGGGATTAATGGAAACCCAGGGCTCCCAGGCCCACCTGGACCCCCAGGCCCCCCTGGAGCCTTCATCAATGGGCCAGACACCCAGGTGGCAGGGCTGCAGGAGGCTGGGGTTGGAGGGGAGTCAATTCCAGATGGAGGAAATTCGGGTAAGCCGCAGTTTGGACGTGGGGAGCTCTCCGCCAGACTAGCACCTGCATTCACCGCTATCCTGACCACCCCATTCCCGCCCTCCGGGATGCCCATTAAGTTTGACAGGACTTTGTACAATGGGCAGAACGCCTACAATCCTGCCACCGGCCTCTTCACCAGCCCCCTTGCTGGAGTATACTACTTTGCCTACCATGTCCATGTAAAGGGAAGCAGTGTCTGGGTGGCGCTCTACAAGAACAATGTGCCAGCCACGTACACTTACGACGAGTACAAGAAAGGATACATGGACCAGGCCTCGGGCAGCGCCGTGCTGGAGCTCAAGGAGAACGATCAGGTGTGGGTGCAGATGCCTTCAGACCAGGCCAATGGATTATATTCCACAGAGTACATCCACTCGACCTTCTCAGGGTTCCTGCTCTGTCCGACATAA

Function

symbol description
col8a2 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy and posterior polymorphous corneal dystrophy 2. Orthologous to human COL8A2 (collagen type VIII alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(VIII) chain

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011093 True 1926 mRNA 0.62 1 10608957 10610882

Neighbor

gene id symbol gene type direction distance location
AMCG00011095 NA coding upstream 5843 10601480 ~ 10603114 (+)
AMCG00011091 trappc3,LOC107653823,LOC107564495 coding upstream 105491 10498477 ~ 10503466 (+)
AMCG00011090 csmd2 coding upstream 416716 10139461 ~ 10192241 (+)
AMCG00011088 csmd2,LOC107712626,LOC107698986,LOC107663732,LOC107757197 coding upstream 521253 10073722 ~ 10087704 (+)
AMCG00011087 csmd2,LOC106957799,LOC103363662 coding upstream 590024 10018562 ~ 10018933 (+)
AMCG00011094 tp4a2,ptp4a2,LOC107564493,LOC107653869,LOC107670276,LOC107710550,LOC105012508 coding downstream 29898 10640780 ~ 10651427 (+)
AMCG00011097 NA coding downstream 428174 11039056 ~ 11093828 (+)
AMCG00011096 NA coding downstream 482953 11093835 ~ 11124053 (+)
AMCG00011098 adgrb2 coding downstream 525834 11136716 ~ 11171971 (+)
AMCG00011099 adgrb2,LOC106931923,LOC107082735 coding downstream 609006 11219888 ~ 11252848 (+)
G104221 NA non-coding upstream 736067 9872653 ~ 9872890 (+)
G104204 NA non-coding upstream 862093 9693144 ~ 9746864 (+)
G104150 pabpc4,LOC107721216,LOC107659242 non-coding upstream 1127283 9477567 ~ 9481674 (+)
G104147 NA non-coding upstream 1133114 9474174 ~ 9475843 (+)
G104115 NA non-coding upstream 1256370 9352373 ~ 9352587 (+)
G104271 NA non-coding downstream 112668 10723550 ~ 10723890 (+)
G104307 col9a2 non-coding downstream 761672 11372554 ~ 11377085 (+)
G104310 NA non-coding downstream 807784 11418666 ~ 11420066 (+)
G104326 NA non-coding downstream 922038 11532920 ~ 11593994 (+)
G104443 NA non-coding downstream 1233528 11844410 ~ 11844623 (+)
AMCG00011089 csmd2 other upstream 337094 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 1059437 9530474 ~ 9549520 (+)
G103939 yars,LOC107724337,LOC107687080,LOC107709269 other upstream 2056352 8548363 ~ 8552605 (+)
AMCG00010994 NA other upstream 3505449 7071433 ~ 7103508 (+)
AMCG00010990 pum1 other upstream 3688026 6892397 ~ 6920931 (+)
G104273 NA other downstream 207806 10818688 ~ 10819423 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other downstream 1033135 11644017 ~ 11651021 (+)
G104382 NA other downstream 1055316 11666198 ~ 11671340 (+)
AMCG00011115 NA other downstream 1197964 11808846 ~ 11810822 (+)
G104435 NA other downstream 1231247 11842129 ~ 11844089 (+)

Expression


Co-expression Network