AMCG00011115


Basic Information

Item Value
gene id AMCG00011115
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11808846 ~ 11810822 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011115
AATAGGCGCAGTCTTCTTGTTCGGTAGCGGGTTTCGGTTCCGTTTGTCGTCGCCACGGTGTCTTAATGTGACAGTAGGGACGGGGCAGCCGTTTACCGGAGCTTTAAAAGAACCATGCCGTTCGTTGACCTCCAGGGGAAGCTGGGCTTGACCCTGGATCGCTGGATCCTGGCACAGAGCGGGGAGCAGCCGTACCGGCGTGCGGCGCGCTGCCATGCCTTCGAGAAGGAGTGGATCGAGTGTGGGCACGGCCTGGGCCTGACCCGCGCCCGCCAGGAGTGCCGGCTGGAGTATGAGGACTTCTACGAGTGCATGCACCGCCAGAAGACGCACAAGCGTCTATATGAGATCCGCGCACAGAAGGAGAAACTGATGAAGGAGGGGAAGTACACTCCCCCGGACCATCACACAGGCAAGGAGGACCAACGGCCCTGAGATGGCACAAGCAGGCAGAGACACAGGGCACCACCTGCCAGTTGGGGGGAGACATCACAGTCTCGACACTGAAGACTCCTACACTGCACCGCCATCGCAGCCTCAACATTGTCCCACCCCCACTGCCACTGGTGCCTGGTGTCAGGCTGTACCATTTGAGCACAGCCCTGATTCTGCAGAGGCAGCCAGTGCAGGGTCTCCtgacatgtatatttatattttgtgttccaGACTCCTCCGCAAACCCTCACTAAATTAATGTGTCCGTGCCGAACCAAACTGGTCACTGTGTGGGCAGTCAGAGACGCTCCTGGGCTGCAGGcttgtttgtctgcttttaCATTTGGCTGGAGAGTTTTCCCCATTTACTGCTGATTTCCCCTCTGTTTACTGCTGTTGATTCGTCTTCTGCACTCAGTTGTGTAATAAATGCGGGCTGTGAGTTTATTtcctgagtgtctgtgtgtgcaatgCTGTCCACTCCTGCaggtgggtgtgggtgtgggtgtgggtggaattgagagtgtgagagtgtgtgtctgtttatactgtgcaaaaggtgtgaaaaaatgctg
>TU130563
AATTATCGTAAAGTGGAGGTGTTTTTCAACAAGGGCAAAGCGACTCCTCCAAGTCTGAGGTAAATAGGCGCAGTCTTCTTGTTCGGTAGCGGGTTTCGGTTCCGTTTGTCGTCGCCACGGTGTCTTAATGTGACAGTAGGGACGGGGCAGCCGTTTACCGGAGCTTTAAAAGAACCATGCCGTTCGTTGACCTCCAGGGGAAGCTGGGCTTGACCCTGGATCGCTGGATCCTGGCACAGAGCGGGGAGCAGCCGTACCGGCGTGCGGCGCGCTGCCATGCCTTCGAGAAGGAGTGGATCGAGTGTGGGCACGGCCTGGGCCTGACCCGCGCCCGCCAGGAGTGCCGGCTGGAGTATGAGGACTTCTACGAGTGCATGCACCGCCAGAAGACGCACAAGCGTCTATATGAGATCCGCGCACAGAAGGAGAAACTGATGAAGGAGGGGAAGTACACTCCCCCGGACCATCACACAGGCAAGGAGGACCAACGGCCCTGAGATGGCACAAGCAGGCAGAGACACAGGGCACCACCTGCCAGTTGGGGGGAGACATCACAGTCTCGACACTGAAGACTCCTACACTGCACCGCCATCGCAGCCTCAACATTGTCCCACCCCCACTGCCACTGGTGCCTGGTGTCAGGCTGTACCATTTGAGCACAGCCCTGATTCTGCAGAGGCAGCCAGTGCAGGGTCTCCtgacatgtatatttatattttgtgttccaGACTCCTCCGCAAACCCTCACTAAATTAATGTGTCCGTGCCGAACCAAACTGGTCACTGTGTGGGCAGTCAGAGACGCTCCTGGGCTGCAGGcttgtttgtctgcttttaCATTTGGCTGGAGAGTTTTCCCCATTTACTGCTGATTTCCCCTCTGTTTACTGCTGTTGATTCGTCTTCTGCACTCAGTTGTGTAATAAATGCGGGCTGTGAGTTTATT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03938 NDUFS5; NADH dehydrogenase (ubiquinone) Fe-S protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011115 True 1010 mRNA 0.55 3 11808908 11810822
TU130563 False 946 TUCP 0.55 3 11808846 11810696

Neighbor

gene id symbol gene type direction distance location
AMCG00011111 NA coding upstream 166619 11638002 ~ 11642227 (+)
AMCG00011108 NA coding upstream 221640 11574540 ~ 11587206 (+)
AMCG00011105 kcnq4 coding upstream 255868 11542988 ~ 11552978 (+)
AMCG00011107 NA coding upstream 278117 11527210 ~ 11530729 (+)
AMCG00011109 kcnq4 coding upstream 308576 11499565 ~ 11500270 (+)
AMCG00011116 NA coding downstream 23022 11833844 ~ 11839029 (+)
AMCG00011122 NA coding downstream 132777 11943599 ~ 11946001 (+)
AMCG00011121 eef1a1l2,LOC107589444,LOC107706209,LOC105892153,LOC105027913 coding downstream 151576 11962398 ~ 11966995 (+)
AMCG00011120 ppt1,LOC107696568,LOC107591677,LOC107697049,LOC107706207,LOC107589449 coding downstream 176040 11986862 ~ 11988912 (+)
AMCG00011133 NA coding downstream 223475 12034297 ~ 12038373 (+)
G104326 NA non-coding upstream 214852 11532920 ~ 11593994 (+)
G104310 NA non-coding upstream 388780 11418666 ~ 11420066 (+)
G104307 col9a2 non-coding upstream 431761 11372554 ~ 11377085 (+)
G104271 NA non-coding upstream 1084956 10723550 ~ 10723890 (+)
G104255 NA non-coding upstream 1191650 10555729 ~ 10617196 (+)
G104443 NA non-coding downstream 33588 11844410 ~ 11844623 (+)
G104444 NA non-coding downstream 33864 11844686 ~ 11845805 (+)
G104445 NA non-coding downstream 35166 11845988 ~ 11846253 (+)
G104479 NA non-coding downstream 103672 11914494 ~ 11917031 (+)
G104480 NA non-coding downstream 106866 11917688 ~ 11918147 (+)
G104382 NA other upstream 137506 11666198 ~ 11671340 (+)
AMCG00011110 zn706,LOC103364770,LOC104931588,LOC101168967,LOC102235987,LOC101064701,LOC103393878 other upstream 157825 11644017 ~ 11651021 (+)
G104273 NA other upstream 989423 10818688 ~ 10819423 (+)
AMCG00011089 csmd2 other upstream 1536983 10203617 ~ 10271863 (+)
AMCG00011076 zbtb8b,LOC107724281,LOC107584246 other upstream 2259326 9530474 ~ 9549520 (+)
G104435 NA other downstream 31307 11842129 ~ 11844089 (+)
G104550 NA other downstream 255672 12066494 ~ 12067337 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other downstream 256629 12067451 ~ 12140465 (+)
G104694 NA other downstream 714538 12525360 ~ 12527031 (+)
G104719 NA other downstream 799307 12610129 ~ 12619055 (+)

Expression


Co-expression Network